Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- plastid 2
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra012976.1-P | Field mustard | cytosol, mitochondrion | 100.0 | 100.0 |
| CDY23077 | Canola | cytosol | 98.86 | 98.3 |
| AT5G61230.1 | Thale cress | cytosol, plastid | 89.14 | 89.66 |
| CDX87205 | Canola | cytosol, mitochondrion | 86.86 | 81.72 |
| CDY16818 | Canola | cytosol, mitochondrion | 87.43 | 80.95 |
| KRH76405 | Soybean | cytosol | 65.14 | 66.28 |
| KRH39707 | Soybean | cytosol | 64.57 | 65.7 |
| PGSC0003DMT400075540 | Potato | cytosol, mitochondrion | 56.57 | 65.13 |
| EES06098 | Sorghum | cytosol, mitochondrion | 59.43 | 63.03 |
| Zm00001d014925_P001 | Maize | mitochondrion | 59.43 | 62.65 |
| VIT_02s0087g00100.t01 | Wine grape | cytosol | 61.71 | 62.07 |
| Os02t0102600-01 | Rice | cytosol, mitochondrion | 58.29 | 61.45 |
| HORVU6Hr1G001980.1 | Barley | mitochondrion | 58.29 | 61.08 |
| GSMUA_Achr9P23190_001 | Banana | cytosol | 60.0 | 61.05 |
| Solyc08g005910.2.1 | Tomato | cytosol | 58.86 | 60.95 |
| TraesCS6D01G006600.1 | Wheat | cytosol | 58.29 | 60.71 |
| PGSC0003DMT400011414 | Potato | cytosol | 58.29 | 60.35 |
| TraesCS6A01G004600.1 | Wheat | mitochondrion | 58.29 | 60.35 |
| TraesCS6B01G009600.1 | Wheat | mitochondrion | 58.29 | 60.35 |
| Solyc12g096260.1.1 | Tomato | cytosol | 44.0 | 60.16 |
| TraesCS2B01G597300.1 | Wheat | cytosol | 57.14 | 59.52 |
Protein Annotations
| Gene3D:1.25.40.20 | MapMan:35.1 | InterPro:Ankyrin_rpt | InterPro:Ankyrin_rpt-contain_dom | InterPro:Ankyrin_rpt-contain_sf | EnsemblPlants:CDY02163 |
| ProteinID:CDY02163 | ProteinID:CDY02163.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00113564001 |
| InterPro:IPR002110 | InterPro:IPR020683 | InterPro:IPR036770 | PFAM:PF12796 | PRINTS:PR01415 | PFscan:PS50088 |
| PFscan:PS50297 | PANTHER:PTHR45189 | SMART:SM00248 | SUPFAM:SSF48403 | UniParc:UPI0002540510 | SEG:seg |
Description
BnaA03g40040D
Coordinates
chrLK031932:-:462833..463824
Molecular Weight (calculated)
19448.9 Da
IEP (calculated)
7.604
GRAVY (calculated)
-0.603
Length
175 amino acids
Sequence
(BLAST)
(BLAST)
001: MIQDLPVAFS LRRNSFRRRS PRSNVDDRGW TPLHVKARKG DLKSVKQLLD QGFDVNALAW GPKSKGVTPL HLAAEGGHIE VMDLLLERGA NIDARTWGSC
101: GWTPLHAAAK ERKREAVKFL VENGAFLPDD ISDTRFNPPV HYCHGLEWAY EEMEKLKSES SSSSSGGDTS CSSEN
101: GWTPLHAAAK ERKREAVKFL VENGAFLPDD ISDTRFNPPV HYCHGLEWAY EEMEKLKSES SSSSSGGDTS CSSEN
001: MLQEPSAAFS LRRNSFRRRS PRSNVDDRGW NPLHIKARKG DLKSVKQLLD QGMDVNALAW GPKSKGVSAL HLAAEGGHIE VMDLLLERGA NIDAKTWGSC
101: GWTPLHAAAK ERKREAVKFL VENGAFLADD ITDTRFNPPV HYCHGLEWAY EEMKKLNSES SSSSGGDTSS SSDN
101: GWTPLHAAAK ERKREAVKFL VENGAFLADD ITDTRFNPPV HYCHGLEWAY EEMKKLNSES SSSSGGDTSS SSDN
Arabidopsis Description
PIA2Phytochrome-interacting ankyrin-repeat protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNP4]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.