Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 2
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY16818 | Canola | cytosol, mitochondrion | 95.16 | 93.65 |
| CDY02163 | Canola | cytosol, mitochondrion | 81.72 | 86.86 |
| CDY23077 | Canola | cytosol | 80.65 | 85.23 |
| AT5G61230.1 | Thale cress | cytosol, plastid | 77.42 | 82.76 |
| KRH76405 | Soybean | cytosol | 61.83 | 66.86 |
| KRH39707 | Soybean | cytosol | 61.29 | 66.28 |
| PGSC0003DMT400075540 | Potato | cytosol, mitochondrion | 52.69 | 64.47 |
| VIT_02s0087g00100.t01 | Wine grape | cytosol | 58.06 | 62.07 |
| Zm00001d014925_P001 | Maize | mitochondrion | 55.38 | 62.05 |
| EES06098 | Sorghum | cytosol, mitochondrion | 54.84 | 61.82 |
| Solyc08g005910.2.1 | Tomato | cytosol | 55.91 | 61.54 |
| PGSC0003DMT400011414 | Potato | cytosol | 55.38 | 60.95 |
| TraesCS6D01G006600.1 | Wheat | cytosol | 54.84 | 60.71 |
| HORVU6Hr1G001980.1 | Barley | mitochondrion | 54.3 | 60.48 |
| GSMUA_Achr9P23190_001 | Banana | cytosol | 55.91 | 60.47 |
| TraesCS6A01G004600.1 | Wheat | mitochondrion | 54.84 | 60.35 |
| TraesCS6B01G009600.1 | Wheat | mitochondrion | 54.84 | 60.35 |
| Os02t0102600-01 | Rice | cytosol, mitochondrion | 53.76 | 60.24 |
| TraesCS2B01G597300.1 | Wheat | cytosol | 53.76 | 59.52 |
| Solyc12g096260.1.1 | Tomato | cytosol | 40.86 | 59.38 |
Protein Annotations
| Gene3D:1.25.40.20 | MapMan:35.1 | InterPro:Ankyrin_rpt | InterPro:Ankyrin_rpt-contain_dom | InterPro:Ankyrin_rpt-contain_sf | EnsemblPlants:CDX87205 |
| ProteinID:CDX87205 | ProteinID:CDX87205.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00146137001 |
| InterPro:IPR002110 | InterPro:IPR020683 | InterPro:IPR036770 | PFAM:PF12796 | PRINTS:PR01415 | PFscan:PS50088 |
| PFscan:PS50297 | PANTHER:PTHR45189 | SMART:SM00248 | SUPFAM:SSF48403 | UniParc:UPI0004EEE66B | SEG:seg |
Description
BnaC09g05200D
Coordinates
chrLK031849:+:1165512..1166350
Molecular Weight (calculated)
20858.0 Da
IEP (calculated)
8.267
GRAVY (calculated)
-0.358
Length
186 amino acids
Sequence
(BLAST)
(BLAST)
001: MIQDQPLVVF SLRRNSFRRR SSITNLDDRG WTPLHVKARK GDLKSVKQLL DQGFDVNALA WGPKSKGVSP LHLAAEGGHI DVMDLLLERG ANIDARTWGS
101: CGWTPLHAAA KERKREAVKF LVENGAFLPD DISDTRFNPP VHYCHGLEWA YEEMKKLNSE SSSSGLAVEK MSELSIMHRP VVEILV
101: CGWTPLHAAA KERKREAVKF LVENGAFLPD DISDTRFNPP VHYCHGLEWA YEEMKKLNSE SSSSGLAVEK MSELSIMHRP VVEILV
001: MLQEPSAAFS LRRNSFRRRS PRSNVDDRGW NPLHIKARKG DLKSVKQLLD QGMDVNALAW GPKSKGVSAL HLAAEGGHIE VMDLLLERGA NIDAKTWGSC
101: GWTPLHAAAK ERKREAVKFL VENGAFLADD ITDTRFNPPV HYCHGLEWAY EEMKKLNSES SSSSGGDTSS SSDN
101: GWTPLHAAAK ERKREAVKFL VENGAFLADD ITDTRFNPPV HYCHGLEWAY EEMKKLNSES SSSSGGDTSS SSDN
Arabidopsis Description
PIA2Phytochrome-interacting ankyrin-repeat protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNP4]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.