Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra000943.1-P | Field mustard | nucleus | 89.34 | 88.0 |
| CDX91876 | Canola | nucleus | 83.08 | 84.08 |
| CDY48504 | Canola | nucleus | 52.79 | 55.42 |
| CDX79176 | Canola | cytosol | 10.49 | 54.87 |
| CDY07174 | Canola | nucleus | 57.36 | 53.3 |
| AT4G01090.1 | Thale cress | nucleus | 60.91 | 50.42 |
| CDX90032 | Canola | nucleus | 45.85 | 48.39 |
| CDY15177 | Canola | nucleus | 44.16 | 46.86 |
| CDX71720 | Canola | cytosol | 33.33 | 26.62 |
| CDX80013 | Canola | nucleus | 29.78 | 26.47 |
| CDY42041 | Canola | cytosol | 28.76 | 26.32 |
| CDY11374 | Canola | cytosol | 32.83 | 26.18 |
| CDY11373 | Canola | cytosol | 31.3 | 25.24 |
| GSMUA_Achr3P25070_001 | Banana | vacuole | 26.9 | 22.98 |
| GSMUA_Achr10P... | Banana | nucleus | 28.43 | 21.43 |
| GSMUA_Achr10P... | Banana | nucleus | 27.07 | 21.3 |
| GSMUA_Achr7P14150_001 | Banana | nucleus | 27.24 | 21.24 |
| GSMUA_Achr10P... | Banana | cytosol | 27.07 | 20.62 |
| TraesCS3D01G229400.1 | Wheat | nucleus | 27.24 | 20.2 |
| Os01t0621300-01 | Rice | nucleus | 27.41 | 20.07 |
| TraesCS3B01G253700.2 | Wheat | nucleus | 26.9 | 19.97 |
| TraesCS1B01G459600.2 | Wheat | plastid | 26.57 | 19.97 |
| TraesCS1D01G434200.2 | Wheat | nucleus | 25.89 | 19.57 |
| HORVU3Hr1G055550.3 | Barley | nucleus | 26.06 | 19.42 |
| Os05t0586400-01 | Rice | nucleus | 25.55 | 19.36 |
| TraesCS1A01G425200.2 | Wheat | nucleus | 25.55 | 19.19 |
| Zm00001d053382_P002 | Maize | nucleus | 26.73 | 19.15 |
| TraesCS7D01G371500.1 | Wheat | nucleus | 26.57 | 18.98 |
| EER88427 | Sorghum | nucleus | 25.38 | 18.84 |
| TraesCS7B01G276600.1 | Wheat | nucleus | 26.4 | 18.84 |
| TraesCS7A01G351500.1 | Wheat | nucleus | 26.23 | 18.83 |
| EES03295 | Sorghum | nucleus | 25.38 | 18.8 |
| Os02t0258300-01 | Rice | nucleus | 26.73 | 18.76 |
| Os06t0524300-01 | Rice | nucleus | 25.72 | 18.74 |
| TraesCS3A01G224200.2 | Wheat | nucleus | 26.4 | 18.7 |
| Zm00001d016081_P002 | Maize | nucleus | 26.9 | 18.66 |
| HORVU0Hr1G021800.1 | Barley | nucleus | 25.72 | 18.65 |
| KXG29961 | Sorghum | nucleus | 27.24 | 18.63 |
| Zm00001d011373_P002 | Maize | nucleus | 25.55 | 18.62 |
| KXG22639 | Sorghum | nucleus | 24.87 | 18.56 |
| TraesCS7B01G247600.1 | Wheat | cytosol | 26.4 | 18.55 |
| TraesCS7A01G336000.1 | Wheat | nucleus | 26.73 | 18.52 |
| Zm00001d044191_P004 | Maize | nucleus | 24.87 | 18.51 |
| TraesCS7D01G343700.1 | Wheat | cytosol | 26.23 | 18.26 |
| Zm00001d046072_P001 | Maize | cytosol | 24.7 | 18.09 |
| Zm00001d009716_P001 | Maize | nucleus | 23.35 | 18.06 |
| HORVU1Hr1G092980.14 | Barley | plastid | 25.89 | 17.45 |
| HORVU7Hr1G082720.10 | Barley | cytosol, nucleus | 24.2 | 16.74 |
Protein Annotations
| EnsemblPlants:CDY67475 | EnsemblPlantsGene:GSBRNA2T00063638001 | InterPro:Zinc_ribbon_12 | ncoils:Coil | PANTHER:PTHR31105 | PANTHER:PTHR31105:SF3 |
| PFAM:PF11331 | ProteinID:CDY67475 | ProteinID:CDY67475.1 | SEG:seg | UniParc:UPI0004EDBA3B | UniProt:A0A078JM11 |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaAnng24350DBnaAnng24350D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JM11]
Coordinates
chrLK036142:-:6547..9746
Molecular Weight (calculated)
65532.5 Da
IEP (calculated)
7.360
GRAVY (calculated)
-0.795
Length
591 amino acids
Sequence
(BLAST)
(BLAST)
001: MRSRGDQVDV RSDAGSSKET TNSRHGSQRS GKSQDLVEPN SNPIEYTERE RAELLRRLDS IKDHLLRGGV GGAVNENQQL LRPVHVRAPS HSPAPSYYHH
101: HQRPYPYPPQ PQGYHHHQDP FRRPPSFQGY PGGQYADVVD PHSYFPATPS RYGDMMPPYS PVSSHQRLYT TPVHTYHNSL SFPSSMSSPG PRGGGYARWP
201: SDLDSEMGGG GAFPRGYVKK AVSESDDARR CHPLAGGAPF IACRSCFELL YLPKKKLLAQ ERLHKLQCGA CSEVISFTVV DKKLVFSSGN EGTTANTVVV
301: EEPVQEVKNQ GDTIRSESQR SDDEERSSVS SEQQQKEVKS VRRRAKDSKA SEPAAPPPES ASLLELFEHS NVNRAALAYG MAELGYIKPD KQEVFMKQDS
401: VKPESIVATE TEVSYNGYTN TTEISEDSNG REDKNRTRNP NEDGGKSIEV WVNGHLIPED LVSSAEKLAG PIQAGKYWYD YRAGFWGVMG KPCLGIIPPF
501: IEEFSHPMPD SCAAGNTEVY VNGRELHKRD LELLVGRGLP RDKNRSYILD ITGRILDGDS GEELKSLGRL APTIQKTKHG FGMRVPRSLA S
101: HQRPYPYPPQ PQGYHHHQDP FRRPPSFQGY PGGQYADVVD PHSYFPATPS RYGDMMPPYS PVSSHQRLYT TPVHTYHNSL SFPSSMSSPG PRGGGYARWP
201: SDLDSEMGGG GAFPRGYVKK AVSESDDARR CHPLAGGAPF IACRSCFELL YLPKKKLLAQ ERLHKLQCGA CSEVISFTVV DKKLVFSSGN EGTTANTVVV
301: EEPVQEVKNQ GDTIRSESQR SDDEERSSVS SEQQQKEVKS VRRRAKDSKA SEPAAPPPES ASLLELFEHS NVNRAALAYG MAELGYIKPD KQEVFMKQDS
401: VKPESIVATE TEVSYNGYTN TTEISEDSNG REDKNRTRNP NEDGGKSIEV WVNGHLIPED LVSSAEKLAG PIQAGKYWYD YRAGFWGVMG KPCLGIIPPF
501: IEEFSHPMPD SCAAGNTEVY VNGRELHKRD LELLVGRGLP RDKNRSYILD ITGRILDGDS GEELKSLGRL APTIQKTKHG FGMRVPRSLA S
001: MRSRGDVSEA EGTRSDAGSS RSEEETSLKE KHSNSRAGSQ RSGKSLRNDE PNYGSDSSSK NTSSSNNPIE YTEHERAELL RRLDSIKDHL LRGGGGGNNV
101: VDKPKEPDQN QPFLRPVHLH GHANHNPGPS YYHQYPEPIQ YPGPVHGMYP QAYQDPYGYQ RRPPPVPNPN WYPPGHYPNQ MARQYPGGQY VELGPDIVEP
201: HSYYPATPGR YGDLPPYSPV SSHHREEKLA TQYSDMPPYS PVSSHHRGEK LTTPYSPRVN NGSSFPSSMG TPGPRGGYAR WPSEHDSEMG GAFARGYVKK
301: AVSDTGVRRC HPLAGGAPFI ACHSCFELLY LPKKKLLSQE RLHKLQCGAC SEVISFTIVD RKLVFSSGNE ETKPVSLEVE DRNTTNTVVI EEEVSSVDFN
401: SSGRDIPRKD EEEPVQELRN HQDTITTQSV RSESQHSDDE ERSSNSSEQQ QKEVKSVRRR GKGSKAPEPA APDNASLLEL FEYSNVNRAA LAYGMAQLGY
501: EKPDKQKSFM TQDSLKPESV ATETEVSYNG YSNTEISEDS RYSNRKGSEY GSTEITTRSS TDQNEDQMKS LEVWVNGHLI PEDLVSSAEK LAGPIQAGKY
601: WYDYRAGFWG VMGKPCLGII PPFIEEFSHP MLDNCAAGNT DVFVNGRELH KRDFELLVGR GLPRDKNRSY IVDISGRILD QDSGEELHSL GKLAPTIEKV
701: KHGFGMRVPR SLAS
101: VDKPKEPDQN QPFLRPVHLH GHANHNPGPS YYHQYPEPIQ YPGPVHGMYP QAYQDPYGYQ RRPPPVPNPN WYPPGHYPNQ MARQYPGGQY VELGPDIVEP
201: HSYYPATPGR YGDLPPYSPV SSHHREEKLA TQYSDMPPYS PVSSHHRGEK LTTPYSPRVN NGSSFPSSMG TPGPRGGYAR WPSEHDSEMG GAFARGYVKK
301: AVSDTGVRRC HPLAGGAPFI ACHSCFELLY LPKKKLLSQE RLHKLQCGAC SEVISFTIVD RKLVFSSGNE ETKPVSLEVE DRNTTNTVVI EEEVSSVDFN
401: SSGRDIPRKD EEEPVQELRN HQDTITTQSV RSESQHSDDE ERSSNSSEQQ QKEVKSVRRR GKGSKAPEPA APDNASLLEL FEYSNVNRAA LAYGMAQLGY
501: EKPDKQKSFM TQDSLKPESV ATETEVSYNG YSNTEISEDS RYSNRKGSEY GSTEITTRSS TDQNEDQMKS LEVWVNGHLI PEDLVSSAEK LAGPIQAGKY
601: WYDYRAGFWG VMGKPCLGII PPFIEEFSHP MLDNCAAGNT DVFVNGRELH KRDFELLVGR GLPRDKNRSY IVDISGRILD QDSGEELHSL GKLAPTIEKV
701: KHGFGMRVPR SLAS
Arabidopsis Description
AT4G01090 protein [Source:UniProtKB/TrEMBL;Acc:Q9M155]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.