Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY67252 | Canola | nucleus | 98.47 | 98.22 |
| Bra008613.1-P | Field mustard | nucleus | 69.72 | 94.16 |
| CDY28659 | Canola | nucleus | 69.97 | 90.16 |
| CDY38105 | Canola | nucleus | 87.28 | 86.18 |
| CDX70701 | Canola | nucleus | 83.21 | 84.94 |
| CDX85500 | Canola | nucleus | 85.75 | 84.46 |
| CDX78699 | Canola | nucleus | 81.93 | 83.42 |
| AT5G16560.1 | Thale cress | nucleus | 85.24 | 83.13 |
| CDY71094 | Canola | mitochondrion | 10.69 | 52.5 |
| CDY69225 | Canola | mitochondrion | 19.85 | 47.27 |
| Solyc06g066340.2.1 | Tomato | nucleus | 31.04 | 41.92 |
| CDY23916 | Canola | nucleus | 26.46 | 39.1 |
| VIT_04s0043g00340.t01 | Wine grape | nucleus | 46.31 | 38.97 |
| CDY35557 | Canola | nucleus | 32.82 | 38.62 |
| CDX93847 | Canola | nucleus | 33.08 | 38.46 |
| CDY68011 | Canola | nucleus | 20.36 | 37.91 |
| CDY43006 | Canola | nucleus | 32.57 | 37.65 |
| CDY01293 | Canola | nucleus | 33.08 | 37.57 |
| CDX84102 | Canola | nucleus | 25.19 | 36.53 |
| PGSC0003DMT400043200 | Potato | nucleus | 35.62 | 35.18 |
| CDX78794 | Canola | nucleus | 27.74 | 34.94 |
| CDY54255 | Canola | nucleus | 25.19 | 33.11 |
| GSMUA_Achr4P04510_001 | Banana | nucleus | 30.79 | 32.27 |
| Os08t0426866-00 | Rice | nucleus | 37.91 | 31.84 |
| KRH39002 | Soybean | nucleus | 32.82 | 31.31 |
| KRH48713 | Soybean | nucleus | 32.82 | 31.01 |
| KXG25180 | Sorghum | nucleus | 36.9 | 30.53 |
| Zm00001d032249_P002 | Maize | plastid | 34.61 | 28.22 |
| CDY00733 | Canola | mitochondrion, nucleus | 9.67 | 26.76 |
| CDY16660 | Canola | mitochondrion | 11.2 | 25.43 |
| CDX94559 | Canola | mitochondrion | 10.69 | 24.28 |
| CDX97319 | Canola | mitochondrion | 12.47 | 23.67 |
| CDY59419 | Canola | nucleus | 12.72 | 20.83 |
| CDX81654 | Canola | nucleus | 12.72 | 20.66 |
| CDX82805 | Canola | nucleus | 12.72 | 20.66 |
| CDY45272 | Canola | nucleus | 12.72 | 20.24 |
| CDY41090 | Canola | nucleus | 12.72 | 20.24 |
| CDY09392 | Canola | nucleus | 13.23 | 19.85 |
| CDY70922 | Canola | nucleus | 12.98 | 19.69 |
| CDY17443 | Canola | nucleus | 12.47 | 18.56 |
| CDY17617 | Canola | nucleus | 12.21 | 18.46 |
| CDY02401 | Canola | nucleus | 26.72 | 16.83 |
| CDY04115 | Canola | nucleus | 11.2 | 16.24 |
| CDX74898 | Canola | nucleus | 13.49 | 15.5 |
| CDX91442 | Canola | nucleus | 13.49 | 15.14 |
| CDY42825 | Canola | nucleus | 12.47 | 14.98 |
| CDY67147 | Canola | nucleus | 12.47 | 14.98 |
| CDY52431 | Canola | nucleus | 14.76 | 14.91 |
| CDX74803 | Canola | nucleus | 14.5 | 14.84 |
| CDY07612 | Canola | nucleus | 14.76 | 14.8 |
| CDY18860 | Canola | nucleus | 14.76 | 14.25 |
| CDY07070 | Canola | nucleus | 13.99 | 13.22 |
| CDX93206 | Canola | nucleus | 13.99 | 13.16 |
| CDY04116 | Canola | nucleus | 4.58 | 8.87 |
| CDY69675 | Canola | cytosol, nucleus | 1.27 | 4.31 |
Protein Annotations
| EnsemblPlants:CDX69443 | EnsemblPlantsGene:GSBRNA2T00135418001 | Gene3D:1.10.10.60 | GO:A0A078C325 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:Myb_dom_plants | InterPro:SANT/Myb | PANTHER:PTHR31496 |
| PANTHER:PTHR31496:SF3 | PFAM:PF00249 | ProteinID:CDX69443 | ProteinID:CDX69443.1 | SEG:seg | SUPFAM:SSF46689 |
| TIGRFAMs:TIGR01557 | UniParc:UPI0004EE116F | MapMan:15.5.2.3 | : | : | : |
Description
BnaA10g17920D
Coordinates
chrLK031790:+:262214..267051
Molecular Weight (calculated)
44316.3 Da
IEP (calculated)
9.523
GRAVY (calculated)
-0.974
Length
393 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGVFLEKPK SNTTLPDLSL NISLPDITSK EHYRRPSQTD NNRSSNFELS LSHHHNPSSN PTTRIIHSPD PRNLNLPHHQ HYNNPILNGG SLHQRVNGSD
101: INSIHRPIRG IPVYQNRSFP FHQQTSLPSL GGGGDLDQIS ILNSSSGYNN AYRSLQSSPR LRGVPLHHHH HNHYGVVGST DSSSPHHHGM IRSRFLPKMP
201: TKRSMRAPRM RWTSSLHARF VHAVELLGGH ERATPKSVLE LMDVKDLTLA HVKSHLQMYR TVKTTNKPAA SSDGSGEEEM GINGNDVHHQ SSTDQRAQSD
301: DTSPHQEIDF PSTQPRWSNS SRETWPLSNN NYSSDIDTMI RTSSTSVISH HQRSILQNQE QQRSSDQTKR CGDLSCNNPS LEFTLGRPDW HEK
101: INSIHRPIRG IPVYQNRSFP FHQQTSLPSL GGGGDLDQIS ILNSSSGYNN AYRSLQSSPR LRGVPLHHHH HNHYGVVGST DSSSPHHHGM IRSRFLPKMP
201: TKRSMRAPRM RWTSSLHARF VHAVELLGGH ERATPKSVLE LMDVKDLTLA HVKSHLQMYR TVKTTNKPAA SSDGSGEEEM GINGNDVHHQ SSTDQRAQSD
301: DTSPHQEIDF PSTQPRWSNS SRETWPLSNN NYSSDIDTMI RTSSTSVISH HQRSILQNQE QQRSSDQTKR CGDLSCNNPS LEFTLGRPDW HEK
001: MSMEGVFLEK TKTNTTTTLP DLSLHISLPD IHQYHHNESS KESSRRSSQL ENNNRSSNFE LSLSHHNHPT ARIFHCPDRR TLNLPHQQHY NNPIINGVHQ
101: RVDESEISNL HRPIRGIPVY HNRSFPFHQQ NSSLPSLGGG DMDQISILNS SSGYNNAYRS LQSSPRLKGV PLHHHHHHNQ YGVVGSSDSS SPHHHNHHHH
201: GMIRSRFLPK MPTKRSMRAP RMRWTSSLHA RFVHAVELLG GHERATPKSV LELMDVKDLT LAHVKSHLQM YRTVKTTNKP AASSDGSGEE EMGINGNEVH
301: HQSSTDQRAQ SDDTSLHQET DISSTQPRWS NSSRETWPLS NNCSSDIDTM IRTSSTSMIS HYQRSSIQNQ EQRSNDQAKR CGNLSCENPS LEFTLGRPDW
401: HEK
101: RVDESEISNL HRPIRGIPVY HNRSFPFHQQ NSSLPSLGGG DMDQISILNS SSGYNNAYRS LQSSPRLKGV PLHHHHHHNQ YGVVGSSDSS SPHHHNHHHH
201: GMIRSRFLPK MPTKRSMRAP RMRWTSSLHA RFVHAVELLG GHERATPKSV LELMDVKDLT LAHVKSHLQM YRTVKTTNKP AASSDGSGEE EMGINGNEVH
301: HQSSTDQRAQ SDDTSLHQET DISSTQPRWS NSSRETWPLS NNCSSDIDTM IRTSSTSMIS HYQRSSIQNQ EQRSNDQAKR CGNLSCENPS LEFTLGRPDW
401: HEK
Arabidopsis Description
KAN1Transcription repressor KAN1 [Source:UniProtKB/Swiss-Prot;Acc:Q93WJ9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.