Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra000270.1-P | Field mustard | nucleus | 81.04 | 92.01 |
| CDY67147 | Canola | nucleus | 91.13 | 91.13 |
| VIT_10s0003g01380.t01 | Wine grape | mitochondrion | 15.6 | 67.11 |
| AT2G42660.1 | Thale cress | nucleus | 50.76 | 65.1 |
| CDY71094 | Canola | mitochondrion | 15.29 | 62.5 |
| CDY00733 | Canola | mitochondrion, nucleus | 14.37 | 33.1 |
| PGSC0003DMT400011207 | Potato | nucleus | 20.8 | 28.69 |
| CDY16660 | Canola | mitochondrion | 14.98 | 28.32 |
| CDX97319 | Canola | mitochondrion | 17.43 | 27.54 |
| CDX74898 | Canola | nucleus | 27.83 | 26.61 |
| CDX94559 | Canola | mitochondrion | 14.07 | 26.59 |
| CDX91442 | Canola | nucleus | 28.13 | 26.29 |
| CDY69225 | Canola | mitochondrion | 13.15 | 26.06 |
| Solyc03g006150.2.1 | Tomato | extracellular, nucleus | 24.16 | 25.73 |
| PGSC0003DMT400026419 | Potato | nucleus | 26.91 | 25.29 |
| CDY09392 | Canola | nucleus | 20.18 | 25.19 |
| Solyc02g076670.2.1 | Tomato | nucleus | 25.99 | 25.15 |
| CDY45272 | Canola | nucleus | 18.96 | 25.1 |
| CDY70922 | Canola | nucleus | 19.88 | 25.1 |
| CDY17617 | Canola | nucleus | 19.88 | 25.0 |
| CDY41090 | Canola | nucleus | 18.65 | 24.7 |
| CDX82805 | Canola | nucleus | 18.04 | 24.38 |
| CDX81654 | Canola | nucleus | 18.04 | 24.38 |
| CDY59419 | Canola | nucleus | 17.74 | 24.17 |
| CDY17443 | Canola | nucleus | 19.27 | 23.86 |
| KRH27060 | Soybean | nucleus | 26.61 | 23.64 |
| KRH22274 | Soybean | nucleus | 26.61 | 23.58 |
| CDY04115 | Canola | nucleus | 18.65 | 22.51 |
| CDY07612 | Canola | nucleus | 26.61 | 22.19 |
| KRH11029 | Soybean | nucleus | 24.77 | 22.19 |
| CDY52431 | Canola | nucleus | 26.3 | 22.11 |
| KRH58975 | Soybean | nucleus | 26.91 | 21.95 |
| KRH42874 | Soybean | nucleus | 26.91 | 21.89 |
| KRH21258 | Soybean | nucleus | 24.77 | 21.72 |
| CDX74803 | Canola | nucleus | 25.08 | 21.35 |
| CDY07070 | Canola | nucleus | 26.91 | 21.15 |
| CDX93206 | Canola | nucleus | 26.91 | 21.05 |
| CDY18860 | Canola | nucleus | 25.69 | 20.64 |
| GSMUA_Achr7P09370_001 | Banana | nucleus | 23.55 | 20.37 |
| CDY68011 | Canola | nucleus | 12.23 | 18.96 |
| TraesCS6A01G109700.1 | Wheat | nucleus | 27.52 | 18.87 |
| CDY23916 | Canola | nucleus | 15.29 | 18.8 |
| TraesCS6D01G098200.1 | Wheat | nucleus | 27.22 | 18.74 |
| HORVU7Hr1G080530.3 | Barley | nucleus | 29.05 | 18.59 |
| OQU76531 | Sorghum | nucleus | 29.05 | 18.55 |
| TraesCS7D01G334100.1 | Wheat | nucleus | 29.05 | 18.38 |
| GSMUA_Achr7P13880_001 | Banana | nucleus | 22.94 | 18.29 |
| HORVU6Hr1G019650.5 | Barley | nucleus | 26.3 | 17.92 |
| TraesCS7B01G238000.1 | Wheat | nucleus | 28.44 | 17.75 |
| CDY54255 | Canola | nucleus | 16.21 | 17.73 |
| CDX84102 | Canola | nucleus | 14.68 | 17.71 |
| EES04827 | Sorghum | nucleus | 28.75 | 17.7 |
| Zm00001d016175_P001 | Maize | nucleus | 29.05 | 17.59 |
| Os06t0543200-01 | Rice | nucleus | 28.75 | 17.31 |
| TraesCS7A01G345200.2 | Wheat | nucleus | 27.22 | 17.21 |
| Zm00001d037015_P001 | Maize | nucleus | 28.75 | 16.97 |
| Zm00001d046174_P001 | Maize | nucleus | 27.52 | 16.95 |
| GSMUA_Achr10P... | Banana | nucleus | 26.61 | 16.8 |
| TraesCS6B01G138200.1 | Wheat | nucleus | 26.91 | 16.67 |
| Os02t0241200-00 | Rice | nucleus | 27.52 | 16.51 |
| CDX78794 | Canola | nucleus | 15.6 | 16.35 |
| CDY35557 | Canola | nucleus | 15.6 | 15.27 |
| CDY43006 | Canola | nucleus | 15.6 | 15.0 |
| CDX93847 | Canola | nucleus | 14.98 | 14.5 |
| CDY04116 | Canola | nucleus | 8.87 | 14.29 |
| CDY01293 | Canola | nucleus | 14.98 | 14.16 |
| CDY28659 | Canola | nucleus | 13.15 | 14.1 |
| CDX69443 | Canola | nucleus | 14.98 | 12.47 |
| CDX78699 | Canola | nucleus | 14.68 | 12.44 |
| CDX70701 | Canola | nucleus | 14.37 | 12.21 |
| CDY67252 | Canola | nucleus | 14.68 | 12.18 |
| CDX85500 | Canola | nucleus | 14.68 | 12.03 |
| CDY38105 | Canola | nucleus | 14.37 | 11.81 |
| CDY69675 | Canola | cytosol, nucleus | 3.67 | 10.34 |
| CDY02401 | Canola | nucleus | 16.82 | 8.81 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.3 | GO:A0A078HWH9 | UniProt:A0A078HWH9 | EnsemblPlants:CDY42825 | ProteinID:CDY42825 |
| ProteinID:CDY42825.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00075507001 |
| InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:Myb_dom_plants | PFAM:PF00249 | PFscan:PS51294 |
| PANTHER:PTHR31314 | PANTHER:PTHR31314:SF41 | InterPro:SANT/Myb | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 | UniParc:UPI0004EF259B |
| SEG:seg | : | : | : | : | : |
Description
BnaC03g23810DBnaC03g23810D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HWH9]
Coordinates
chrLK032535:+:222259..224299
Molecular Weight (calculated)
37497.8 Da
IEP (calculated)
8.473
GRAVY (calculated)
-0.582
Length
327 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGTSSPEKC SMWLDLNREE AVEKYNEEES SVEDEDQQVT SSNNVRQYVR SNMPRLRWTP DLHLSFVRAV QRLGGPHRAT PKMVLQMMNL KGLSIAHVKS
101: HLQMYRSKKL EATSLHADVG AMMGAQRNYL LDMIDIPYGD LRHAYYPKTV PSRVRNQDAI FTNLGTNFVM RPSSWCNRLS GHELNNGRGE LDRDSMESKT
201: LPLLEEDDPR EKSPRRSGKR SIISQTIKTN ARRWDQHDAL AVSVLDIIRR VTVVMASDIV ETIWVRLDSD PKLSVDKLMR ETDNIRFRAD RSSVESSLGL
301: RLRKRTCLAL ETASLIEQGF DCIFNCL
101: HLQMYRSKKL EATSLHADVG AMMGAQRNYL LDMIDIPYGD LRHAYYPKTV PSRVRNQDAI FTNLGTNFVM RPSSWCNRLS GHELNNGRGE LDRDSMESKT
201: LPLLEEDDPR EKSPRRSGKR SIISQTIKTN ARRWDQHDAL AVSVLDIIRR VTVVMASDIV ETIWVRLDSD PKLSVDKLMR ETDNIRFRAD RSSVESSLGL
301: RLRKRTCLAL ETASLIEQGF DCIFNCL
001: MAGRSSPGKC STWLDLNREE TVEKNNEEES SVEDEDQITN NVRQYIRSNM PRLRWTPDLH LSFVRAVQRL GGPDRATPKL VLEMMNLKGL SIAHVKSHLQ
101: MYRSKKLEPS SRPGFGAFMS GQRSYLMDMI DSRCIPHSDL RHAYNSKTVP SRVLNQDAVV TNLGGNFLMR PSSWFSGLCR NDRDSTENKT LPLLEIRKKN
201: NEKRVRDEEV SSVKRLKSMS GGGIQLPEFG NCRQKPTDDI NTMLSLSLLS TSSEP
101: MYRSKKLEPS SRPGFGAFMS GQRSYLMDMI DSRCIPHSDL RHAYNSKTVP SRVLNQDAVV TNLGGNFLMR PSSWFSGLCR NDRDSTENKT LPLLEIRKKN
201: NEKRVRDEEV SSVKRLKSMS GGGIQLPEFG NCRQKPTDDI NTMLSLSLLS TSSEP
Arabidopsis Description
At2g45350/F14N22.7 [Source:UniProtKB/TrEMBL;Acc:Q9SJJ0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.