Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_10s0003g01380.t01 | Wine grape | mitochondrion | 21.18 | 71.05 |
| CDY42825 | Canola | nucleus | 65.1 | 50.76 |
| CDY67147 | Canola | nucleus | 61.18 | 47.71 |
| Bra000270.1-P | Field mustard | nucleus | 50.2 | 44.44 |
| AT4G04555.1 | Thale cress | mitochondrion | 16.47 | 39.62 |
| PGSC0003DMT400011207 | Potato | nucleus | 26.67 | 28.69 |
| AT4G04580.1 | Thale cress | nucleus | 17.25 | 26.51 |
| Solyc02g076670.2.1 | Tomato | nucleus | 32.94 | 24.85 |
| Solyc03g006150.2.1 | Tomato | extracellular, nucleus | 29.8 | 24.76 |
| PGSC0003DMT400026419 | Potato | nucleus | 33.73 | 24.71 |
| AT2G38300.1 | Thale cress | nucleus | 31.76 | 23.82 |
| AT2G02060.1 | Thale cress | nucleus, plastid | 23.53 | 23.44 |
| AT1G14600.1 | Thale cress | nucleus | 23.14 | 23.14 |
| AT4G04605.1 | Thale cress | mitochondrion | 19.22 | 22.27 |
| KRH27060 | Soybean | nucleus | 30.98 | 21.47 |
| GSMUA_Achr7P09370_001 | Banana | nucleus | 31.76 | 21.43 |
| KRH11029 | Soybean | nucleus | 30.59 | 21.37 |
| KRH21258 | Soybean | nucleus | 30.59 | 20.91 |
| KRH22274 | Soybean | nucleus | 30.2 | 20.87 |
| KRH58975 | Soybean | nucleus | 31.37 | 19.95 |
| KRH42874 | Soybean | nucleus | 31.37 | 19.9 |
| GSMUA_Achr7P13880_001 | Banana | nucleus | 30.2 | 18.78 |
| AT5G42630.1 | Thale cress | nucleus | 19.61 | 18.12 |
| AT2G40260.1 | Thale cress | nucleus | 28.24 | 17.56 |
| TraesCS6D01G098200.1 | Wheat | nucleus | 31.76 | 17.05 |
| TraesCS6A01G109700.1 | Wheat | nucleus | 31.76 | 16.98 |
| AT4G17695.1 | Thale cress | nucleus | 21.18 | 16.77 |
| OQU76531 | Sorghum | nucleus | 32.94 | 16.41 |
| HORVU6Hr1G019650.5 | Barley | nucleus | 30.2 | 16.04 |
| HORVU7Hr1G080530.3 | Barley | nucleus | 31.37 | 15.66 |
| GSMUA_Achr10P... | Banana | nucleus | 31.76 | 15.64 |
| TraesCS7D01G334100.1 | Wheat | nucleus | 31.37 | 15.47 |
| TraesCS7B01G238000.1 | Wheat | nucleus | 30.98 | 15.08 |
| Zm00001d046174_P001 | Maize | nucleus | 31.37 | 15.07 |
| Os06t0543200-01 | Rice | nucleus | 31.76 | 14.92 |
| Zm00001d037015_P001 | Maize | nucleus | 32.16 | 14.8 |
| TraesCS6B01G138200.1 | Wheat | nucleus | 30.59 | 14.77 |
| TraesCS7A01G345200.2 | Wheat | nucleus | 29.8 | 14.7 |
| EES04827 | Sorghum | nucleus | 30.59 | 14.69 |
| Os02t0241200-00 | Rice | nucleus | 30.59 | 14.31 |
| Zm00001d016175_P001 | Maize | nucleus | 30.2 | 14.26 |
| AT1G32240.1 | Thale cress | nucleus | 21.57 | 14.18 |
| AT5G16560.1 | Thale cress | nucleus | 19.61 | 12.41 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.3 | EntrezGene:818866 | ProteinID:AAD21740.1 | ProteinID:AAM15384.1 | ProteinID:AEC10152.1 |
| ArrayExpress:AT2G42660 | EnsemblPlantsGene:AT2G42660 | RefSeq:AT2G42660 | TAIR:AT2G42660 | RefSeq:AT2G42660-TAIR-G | EnsemblPlants:AT2G42660.1 |
| TAIR:AT2G42660.1 | EMBL:AY074640 | EMBL:AY078938 | Unigene:At.37023 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom |
| InterPro:Myb_dom_plants | RefSeq:NP_181794.1 | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR31314 | PANTHER:PTHR31314:SF41 |
| UniProt:Q9SJJ0 | InterPro:SANT/Myb | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 | UniParc:UPI00000A32D9 | SEG:seg |
Description
At2g45350/F14N22.7 [Source:UniProtKB/TrEMBL;Acc:Q9SJJ0]
Coordinates
chr2:-:17767050..17768379
Molecular Weight (calculated)
28915.5 Da
IEP (calculated)
9.707
GRAVY (calculated)
-0.729
Length
255 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGRSSPGKC STWLDLNREE TVEKNNEEES SVEDEDQITN NVRQYIRSNM PRLRWTPDLH LSFVRAVQRL GGPDRATPKL VLEMMNLKGL SIAHVKSHLQ
101: MYRSKKLEPS SRPGFGAFMS GQRSYLMDMI DSRCIPHSDL RHAYNSKTVP SRVLNQDAVV TNLGGNFLMR PSSWFSGLCR NDRDSTENKT LPLLEIRKKN
201: NEKRVRDEEV SSVKRLKSMS GGGIQLPEFG NCRQKPTDDI NTMLSLSLLS TSSEP
101: MYRSKKLEPS SRPGFGAFMS GQRSYLMDMI DSRCIPHSDL RHAYNSKTVP SRVLNQDAVV TNLGGNFLMR PSSWFSGLCR NDRDSTENKT LPLLEIRKKN
201: NEKRVRDEEV SSVKRLKSMS GGGIQLPEFG NCRQKPTDDI NTMLSLSLLS TSSEP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.