Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra005124.1-P | Field mustard | nucleus | 81.47 | 82.2 |
| CDX74898 | Canola | nucleus | 81.47 | 80.99 |
| CDX91442 | Canola | nucleus | 81.47 | 79.14 |
| VIT_08s0058g00250.t01 | Wine grape | nucleus | 20.0 | 58.62 |
| Solyc09g005030.1.1 | Tomato | nucleus | 22.65 | 52.74 |
| AT4G04555.1 | Thale cress | mitochondrion | 12.65 | 40.57 |
| Solyc10g076460.1.1 | Tomato | nucleus | 33.24 | 37.42 |
| PGSC0003DMT400041071 | Potato | nucleus | 33.24 | 37.42 |
| PGSC0003DMT400068508 | Potato | nucleus | 31.76 | 33.03 |
| KRH65638 | Soybean | nucleus | 33.53 | 32.95 |
| KRH49433 | Soybean | nucleus | 35.0 | 32.51 |
| KRH75999 | Soybean | nucleus | 32.65 | 32.36 |
| KRH00305 | Soybean | nucleus | 34.71 | 31.98 |
| AT2G42660.1 | Thale cress | nucleus | 23.82 | 31.76 |
| AT4G04580.1 | Thale cress | nucleus | 14.12 | 28.92 |
| AT2G02060.1 | Thale cress | nucleus, plastid | 21.76 | 28.91 |
| AT1G14600.1 | Thale cress | nucleus | 21.47 | 28.63 |
| AT2G40260.1 | Thale cress | nucleus | 32.65 | 27.07 |
| AT4G04605.1 | Thale cress | mitochondrion | 16.18 | 25.0 |
| AT5G42630.1 | Thale cress | nucleus | 15.59 | 19.2 |
| AT4G17695.1 | Thale cress | nucleus | 16.18 | 17.08 |
| AT1G32240.1 | Thale cress | nucleus | 16.76 | 14.69 |
| AT5G16560.1 | Thale cress | nucleus | 15.0 | 12.66 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.3 | EntrezGene:818410 | UniProt:A0A178VYP6 | ProteinID:AEC09520.1 | EMBL:AK117689 |
| ArrayExpress:AT2G38300 | EnsemblPlantsGene:AT2G38300 | RefSeq:AT2G38300 | TAIR:AT2G38300 | RefSeq:AT2G38300-TAIR-G | EnsemblPlants:AT2G38300.1 |
| TAIR:AT2G38300.1 | Unigene:At.46670 | EMBL:BT004973 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom |
| InterPro:Myb_dom_plants | RefSeq:NP_181364.2 | ProteinID:OAP11417.1 | PFAM:PF00249 | PO:PO:0000293 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007611 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009047 | PFscan:PS51294 | PANTHER:PTHR31314 | PANTHER:PTHR31314:SF41 | UniProt:Q8GYE4 |
| InterPro:SANT/Myb | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 | UniParc:UPI000000C521 | SEG:seg | : |
Description
Myb-like HTH transcriptional regulator family protein [Source:UniProtKB/TrEMBL;Acc:Q8GYE4]
Coordinates
chr2:-:16043948..16046015
Molecular Weight (calculated)
38927.4 Da
IEP (calculated)
9.210
GRAVY (calculated)
-1.016
Length
340 amino acids
Sequence
(BLAST)
(BLAST)
001: MIPSMEGGGK TNREEEEEEE EEEEEGEESK VSSNSTVEES DKKTKVRPYV RSKVPRLRWT PDLHLRFVRA VERLGGQERA TPKLVRQMMN IKGLSIAHVK
101: SHLQMYRSKK IDDQGQAIAG HKHLFETSTD RNIYKLSQLP MFRGYNHNHD SPFRYGSKIS NASLWNSSSQ GTERSLIDQI RPGLIRNASV SNNIRGSDYW
201: TNNKSFQNIY SSSISNHFPK LRHDHHERTN SVTFNSIQGH SRTFQKFHNG VEENTNHSYC SKTNGKRDAS RSIDLDLSLK LRQPEKTILE ETETAATTTD
301: QTLSLSLCPG SSSWKKSRLM KDEEDRTVKI GQESTLDLTL
101: SHLQMYRSKK IDDQGQAIAG HKHLFETSTD RNIYKLSQLP MFRGYNHNHD SPFRYGSKIS NASLWNSSSQ GTERSLIDQI RPGLIRNASV SNNIRGSDYW
201: TNNKSFQNIY SSSISNHFPK LRHDHHERTN SVTFNSIQGH SRTFQKFHNG VEENTNHSYC SKTNGKRDAS RSIDLDLSLK LRQPEKTILE ETETAATTTD
301: QTLSLSLCPG SSSWKKSRLM KDEEDRTVKI GQESTLDLTL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.