CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89416
KRH04275
KRH11729
KRH11775
KRH16959
KRH28216
KRH28419
KRH36722
KRH36781
KRH43001
KRH50476
KRH53667
KRH57556
KRH57983
KRH59117
KRH64261
KRH77058
KRH77271

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G38300.1	KRH28419	AT2G23290.1	21798944
AT2G38300.1	KRH57983	AT2G23290.1	21798944
AT2G38300.1	KRH77058	AT2G23290.1	21798944
AT2G38300.1	KRH11775	AT2G34710.1	21798944
AT2G38300.1	KRH36781	AT2G34710.1	21798944
AT2G38300.1	KRH43001	AT2G34710.1	21798944
AT2G38300.1	KRH59117	AT2G34710.1	21798944
AT2G38300.1	KRH04275	AT4G17680.1	21798944
AT2G38300.1	KRH28216	AT4G17680.1	21798944
AT2G38300.1	KRH57556	AT4G17680.1	21798944
AT2G38300.1	KRH77271	AT4G17680.1	21798944
AT2G38300.1	KRG89416	AT4G19700.1	21798944
AT2G38300.1	KRH11729	AT4G19700.1	21798944
AT2G38300.1	KRH36722	AT4G19700.1	21798944
AT2G38300.1	KRH50476	AT4G19700.1	21798944
AT2G38300.1	KRH16959	AT5G24660.1	21798944
AT2G38300.1	KRH53667	AT5G24660.1	21798944
AT2G38300.1	KRH64261	AT5G24660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH49433	Soybean	nucleus	93.22	93.99
VIT_08s0058g00250.t01	Wine grape	nucleus	23.31	74.14
KRH65638	Soybean	nucleus	60.16	64.16
KRH75999	Soybean	nucleus	58.54	62.97
Solyc09g005030.1.1	Tomato	nucleus	23.31	58.9
PGSC0003DMT400068508	Potato	nucleus	38.48	43.43
Solyc10g076460.1.1	Tomato	nucleus	31.98	39.07
PGSC0003DMT400041071	Potato	nucleus	31.71	38.74
AT2G38300.1	Thale cress	nucleus	31.98	34.71
Bra005124.1-P	Field mustard	nucleus	30.89	33.83
GSMUA_Achr7P22410_001	Banana	nucleus	30.35	33.73
CDX74898	Canola	nucleus	30.89	33.33
Os11t0106100-00	Rice	nucleus	18.97	32.86
CDX91442	Canola	nucleus	30.35	32.0
TraesCS5A01G153000.1	Wheat	nucleus	25.47	28.83
Os12t0105600-01	Rice	nucleus	24.12	28.34
TraesCS5D01G158300.1	Wheat	nucleus	24.66	28.09
TraesCS5B01G151800.1	Wheat	nucleus	25.47	27.89
KRH22274	Soybean	nucleus	27.64	27.64
EES15503	Sorghum	nucleus	27.37	27.6
KRH27060	Soybean	nucleus	27.37	27.45
TraesCS4A01G180900.1	Wheat	nucleus	25.2	27.27
KRH14524	Soybean	nucleus	13.55	26.74
TraesCS4D01G131500.1	Wheat	nucleus	24.66	26.69
EES09087	Sorghum	nucleus	26.02	26.45
TraesCS4B01G136900.1	Wheat	nucleus	24.12	26.25
KRH11029	Soybean	nucleus	24.93	25.21
KRH21258	Soybean	nucleus	25.2	24.93
Zm00001d005087_P001	Maize	nucleus	23.04	24.43
KRH73595	Soybean	nucleus	14.09	24.41
KRH11454	Soybean	nucleus	18.97	24.39
KRH15279	Soybean	mitochondrion	12.74	24.35
KRG99004	Soybean	nucleus	13.55	24.04
KRH36473	Soybean	nucleus	18.43	24.03
KRH58975	Soybean	nucleus	25.47	23.44
KRH42874	Soybean	nucleus	25.2	23.13
KRG90693	Soybean	nucleus	18.43	22.44
KRG89170	Soybean	nucleus	16.53	20.75
KRH49492	Soybean	nucleus	16.26	20.0
KRH74367	Soybean	nucleus	13.01	17.39
KRH05752	Soybean	nucleus	15.45	17.22
KRH61226	Soybean	nucleus	14.91	16.62
KRH51927	Soybean	nucleus	14.63	16.36
KRH36060	Soybean	nucleus	10.57	15.98
KRH39575	Soybean	nucleus	15.72	14.87
KRH39002	Soybean	nucleus	15.45	13.84
KRH48713	Soybean	nucleus	15.18	13.46
KRH72942	Soybean	nucleus	15.18	12.02
KRH17301	Soybean	nucleus	14.91	11.85
KRG97985	Soybean	nucleus	14.09	10.92
KRH30907	Soybean	nucleus	14.36	10.49
KRH45989	Soybean	nucleus	3.52	8.07

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100802192	MapMan:15.5.2.3	EMBL:ACUP02011435	EnsemblPlantsGene:GLYMA_18G204900	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:K7MTM5	EnsemblPlants:KRH00305
ProteinID:KRH00305	ProteinID:KRH00305.1	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294
PANTHER:PTHR31314	PANTHER:PTHR31314:SF41	InterPro:SANT/Myb	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI0002960DFC
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr18:-:48839371..48840962

Molecular Weight (calculated)

41603.4 Da

IEP (calculated)

6.741

GRAVY (calculated)

-0.844

Length

369 amino acids

Sequence
(BLAST)

001: MRMEEERHGS SECSKTSPSN EEDCEESEGY EDESKQNNNN GGSSSNSTVE ENEKKTTVRP YVRSKMPRLR WTPDLHLRFV HAVQRLGGQE RATPKLVLQL
101: MNIKGLSIAH VKSHLQMYRS KKVDTNQVLA DPRFLVETGD RNVYNLSQLP MLQGYNPSQS SSYRYGYGDA SLAIYENMVH RPFMNRSSLD ESGAEFCGSR
201: LTERIHGTNS NINWTRNMFQ VDSSSSFNEP STSKVQEPKH KFFSFGGNES SCTQIKMSQV DLHQSTQLQP GAQELMPNNK FATNEVELKT LKRKASDIDL
301: DLNLSLKLNS RVNAENQGSM VDHEVVDSNL SLSLCSQSSS FSSNRLKNSQ DHSKEQGEII RASALDLTI

Best Arabidopsis Sequence Match ( AT2G38300.1 )
(BLAST)

001: MIPSMEGGGK TNREEEEEEE EEEEEGEESK VSSNSTVEES DKKTKVRPYV RSKVPRLRWT PDLHLRFVRA VERLGGQERA TPKLVRQMMN IKGLSIAHVK
101: SHLQMYRSKK IDDQGQAIAG HKHLFETSTD RNIYKLSQLP MFRGYNHNHD SPFRYGSKIS NASLWNSSSQ GTERSLIDQI RPGLIRNASV SNNIRGSDYW
201: TNNKSFQNIY SSSISNHFPK LRHDHHERTN SVTFNSIQGH SRTFQKFHNG VEENTNHSYC SKTNGKRDAS RSIDLDLSLK LRQPEKTILE ETETAATTTD
301: QTLSLSLCPG SSSWKKSRLM KDEEDRTVKI GQESTLDLTL

Arabidopsis Description

Myb-like HTH transcriptional regulator family protein [Source:UniProtKB/TrEMBL;Acc:Q8GYE4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.