CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89416
KRH04275
KRH11729
KRH11775
KRH16959
KRH28216
KRH28419
KRH36722
KRH36781
KRH43001
KRH50476
KRH53667
KRH57556
KRH57983
KRH59117
KRH64261
KRH77058
KRH77271

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G38300.1	KRH28419	AT2G23290.1	21798944
AT2G38300.1	KRH57983	AT2G23290.1	21798944
AT2G38300.1	KRH77058	AT2G23290.1	21798944
AT2G38300.1	KRH11775	AT2G34710.1	21798944
AT2G38300.1	KRH36781	AT2G34710.1	21798944
AT2G38300.1	KRH43001	AT2G34710.1	21798944
AT2G38300.1	KRH59117	AT2G34710.1	21798944
AT2G38300.1	KRH04275	AT4G17680.1	21798944
AT2G38300.1	KRH28216	AT4G17680.1	21798944
AT2G38300.1	KRH57556	AT4G17680.1	21798944
AT2G38300.1	KRH77271	AT4G17680.1	21798944
AT2G38300.1	KRG89416	AT4G19700.1	21798944
AT2G38300.1	KRH11729	AT4G19700.1	21798944
AT2G38300.1	KRH36722	AT4G19700.1	21798944
AT2G38300.1	KRH50476	AT4G19700.1	21798944
AT2G38300.1	KRH16959	AT5G24660.1	21798944
AT2G38300.1	KRH53667	AT5G24660.1	21798944
AT2G38300.1	KRH64261	AT5G24660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH00305	Soybean	nucleus	93.99	93.22
VIT_08s0058g00250.t01	Wine grape	nucleus	23.77	75.0
KRH65638	Soybean	nucleus	60.93	64.45
KRH75999	Soybean	nucleus	59.02	62.97
Solyc09g005030.1.1	Tomato	nucleus	24.04	60.27
PGSC0003DMT400068508	Potato	nucleus	39.89	44.65
Solyc10g076460.1.1	Tomato	nucleus	31.97	38.74
PGSC0003DMT400041071	Potato	nucleus	31.69	38.41
AT2G38300.1	Thale cress	nucleus	32.51	35.0
Bra005124.1-P	Field mustard	nucleus	31.69	34.42
CDX74898	Canola	nucleus	31.69	33.92
GSMUA_Achr7P22410_001	Banana	nucleus	30.6	33.73
Os11t0106100-00	Rice	nucleus	19.4	33.33
CDX91442	Canola	nucleus	31.15	32.57
TraesCS5A01G153000.1	Wheat	nucleus	25.41	28.53
EES15503	Sorghum	nucleus	28.14	28.14
TraesCS5D01G158300.1	Wheat	nucleus	24.86	28.09
Os12t0105600-01	Rice	nucleus	24.04	28.03
KRH22274	Soybean	nucleus	27.87	27.64
TraesCS5B01G151800.1	Wheat	nucleus	25.41	27.6
TraesCS4A01G180900.1	Wheat	nucleus	25.41	27.27
KRH27060	Soybean	nucleus	27.32	27.17
EES09087	Sorghum	nucleus	26.78	27.0
TraesCS4D01G131500.1	Wheat	nucleus	24.86	26.69
TraesCS4B01G136900.1	Wheat	nucleus	24.32	26.25
KRH14524	Soybean	nucleus	13.39	26.2
KRH21258	Soybean	nucleus	25.14	24.66
KRH11029	Soybean	nucleus	24.59	24.66
Zm00001d005087_P001	Maize	nucleus	23.22	24.43
KRH11454	Soybean	nucleus	19.13	24.39
KRH15279	Soybean	mitochondrion	12.84	24.35
KRH36473	Soybean	nucleus	18.58	24.03
KRH73595	Soybean	nucleus	13.93	23.94
KRG99004	Soybean	nucleus	13.39	23.56
KRH58975	Soybean	nucleus	25.68	23.44
KRH42874	Soybean	nucleus	25.41	23.13
KRG90693	Soybean	nucleus	18.03	21.78
KRG89170	Soybean	nucleus	16.67	20.75
KRH49492	Soybean	nucleus	16.39	20.0
KRH74367	Soybean	nucleus	12.84	17.03
KRH05752	Soybean	nucleus	15.3	16.92
KRH61226	Soybean	nucleus	14.75	16.31
KRH51927	Soybean	nucleus	14.48	16.06
KRH36060	Soybean	nucleus	10.11	15.16
KRH39575	Soybean	nucleus	15.3	14.36
KRH39002	Soybean	nucleus	15.03	13.35
KRH48713	Soybean	nucleus	15.03	13.22
KRH72942	Soybean	nucleus	15.3	12.02
KRH17301	Soybean	nucleus	15.03	11.85
KRG97985	Soybean	nucleus	13.93	10.71
KRH30907	Soybean	nucleus	14.21	10.3
KRH45989	Soybean	nucleus	3.83	8.7

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:102662997	MapMan:15.5.2.3	EMBL:ACUP02004363	EnsemblPlantsGene:GLYMA_07G153900	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	UniProt:I1KKI3	InterPro:IPR017930	EnsemblPlants:KRH49433
ProteinID:KRH49433	ProteinID:KRH49433.1	ProteinID:KRH49434.1	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249
PFscan:PS51294	PANTHER:PTHR31314	PANTHER:PTHR31314:SF41	InterPro:SANT/Myb	SUPFAM:SSF46689	TIGRFAMs:TIGR01557
UniParc:UPI00023C777C	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:-:18918471..18920069

Molecular Weight (calculated)

40994.8 Da

IEP (calculated)

6.707

GRAVY (calculated)

-0.805

Length

366 amino acids

Sequence
(BLAST)

001: MRMEEERHGS ECSKTSPSNE EGCEEESEGN EDESKPNNNN GGSSSNSTVE ENEKKTTVRP YVRSKMPRLR WTPDLHLRFI HAVQRLGGQE RATPKLVLQL
101: MNIKGLSIAH VKSHLQMYRS KKVDTNQVLA DPRLLVETGD RNVYNLSQLP MLQGYNPSQS SAYRYGYGDA SLAIYENMVH GPFMNRSSLD ESGAEFCGSR
201: LTHGTNSNIN WIHNMFQVDS SSSFNEPSTS KVHEPKHKFF SFGGNESSST QIKMSQVDLH LSTQPQPSAQ ELMPNNKFTT NEMELKTLKR KASDIDLDLN
301: LSLKLNSRVS AENQGSMVDH EVVDSNLSLS LCSQSSSFSS SRLKKAQDHS KEQGEIIRAS TLDLTI

Best Arabidopsis Sequence Match ( AT2G38300.1 )
(BLAST)

001: MIPSMEGGGK TNREEEEEEE EEEEEGEESK VSSNSTVEES DKKTKVRPYV RSKVPRLRWT PDLHLRFVRA VERLGGQERA TPKLVRQMMN IKGLSIAHVK
101: SHLQMYRSKK IDDQGQAIAG HKHLFETSTD RNIYKLSQLP MFRGYNHNHD SPFRYGSKIS NASLWNSSSQ GTERSLIDQI RPGLIRNASV SNNIRGSDYW
201: TNNKSFQNIY SSSISNHFPK LRHDHHERTN SVTFNSIQGH SRTFQKFHNG VEENTNHSYC SKTNGKRDAS RSIDLDLSLK LRQPEKTILE ETETAATTTD
301: QTLSLSLCPG SSSWKKSRLM KDEEDRTVKI GQESTLDLTL

Arabidopsis Description

Myb-like HTH transcriptional regulator family protein [Source:UniProtKB/TrEMBL;Acc:Q8GYE4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.