CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG90619
KRG91274
KRG93828
KRH01494
KRH01744
KRH02746
KRH08093
KRH18264
KRH19120
KRH28787
KRH35533
KRH36141
KRH44140
KRH46935
KRH47114
KRH69796
KRH76667

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G19700.1	KRH02746	AT2G24570.1	21798944
AT4G19700.1	KRH19120	AT2G24570.1	21798944
AT4G19700.1	KRH01744	AT2G43370.1	21798944
AT4G19700.1	KRH46935	AT2G43370.1	21798944
AT4G19700.1	KRH44140	AT3G13860.1	21798944
AT4G19700.1	KRH47114	AT3G13860.1	21798944
AT4G19700.1	KRG91274	AT4G02770.1	21798944
AT4G19700.1	KRH35533	AT4G02770.1	21798944
AT4G19700.1	KRH02746	AT4G31550.1	21798944
AT4G19700.1	KRH19120	AT4G31550.1	21798944
AT4G19700.1	KRH08093	AT4G36110.1	21798944
AT4G19700.1	KRH28787	AT4G36110.1	21798944
AT4G19700.1	KRH69796	AT4G36110.1	21798944
AT4G19700.1	KRH76667	AT4G36110.1	21798944
AT4G19700.1	KRG90619	AT5G08330.1	21798944
AT4G19700.1	KRH36141	AT5G08330.1	21798944
AT4G19700.1	KRG93828	AT5G38640.1	21798944
AT4G19700.1	KRH01494	AT5G38640.1	21798944
AT4G19700.1	KRH18264	AT5G38640.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH11729	Soybean	nucleus	92.9	92.01
KRH50476	Soybean	cytosol, nucleus, plastid	59.03	57.19
KRG89416	Soybean	nucleus	57.1	56.37
VIT_10s0042g01070.t01	Wine grape	nucleus	52.58	53.8
PGSC0003DMT400062617	Potato	nucleus	49.35	51.0
AT5G45100.1	Thale cress	cytosol	47.1	49.66
CDX94520	Canola	cytosol	37.42	49.57
CDY07541	Canola	cytosol	37.42	49.57
CDY09318	Canola	cytosol	37.42	49.57
CDY21311	Canola	cytosol	37.42	49.57
PGSC0003DMT400026783	Potato	cytosol, mitochondrion, nucleus, plastid, vacuole	50.97	48.92
CDY26402	Canola	cytosol	46.13	48.31
Solyc02g031710.2.1	Tomato	nucleus	48.06	48.06
Bra039533.1-P	Field mustard	cytosol, nucleus, plastid	45.81	47.97
CDY01615	Canola	cytosol	45.48	46.23
AT4G19700.1	Thale cress	cytosol	45.16	46.05
Bra013423.1-P	Field mustard	nucleus	43.55	45.61
KRH43767	Soybean	nucleus	37.1	45.45
CDY71607	Canola	cytosol	44.84	45.42
Bra012532.1-P	Field mustard	nucleus	44.84	45.42
CDY51918	Canola	cytosol	41.94	45.3
Solyc02g069180.2.1	Tomato	plastid	40.97	44.88
KRH13682	Soybean	nucleus	47.1	43.32
CDY71192	Canola	cytosol	39.03	43.21
CDY13070	Canola	cytosol	38.39	42.65
GSMUA_Achr2P13160_001	Banana	plastid	33.87	42.51
Bra027588.1-P	Field mustard	cytosol, nucleus, plastid	38.06	42.29
CDY18062	Canola	cytosol	38.06	41.84
Bra028364.1-P	Field mustard	cytosol, nucleus, plastid	38.06	41.84
CDY46345	Canola	cytosol	37.42	41.13
GSMUA_Achr4P32070_001	Banana	nucleus	37.1	40.21
GSMUA_Achr5P02100_001	Banana	plastid	30.97	39.34
GSMUA_Achr7P00850_001	Banana	plastid	29.03	39.13
GSMUA_Achr4P23050_001	Banana	nucleus	23.55	38.83
GSMUA_Achr6P31690_001	Banana	nucleus	36.13	37.58
GSMUA_Achr4P28300_001	Banana	nucleus	28.39	36.51
GSMUA_Achr9P09830_001	Banana	nucleus	37.74	36.45
TraesCS6A01G079900.1	Wheat	cytosol, mitochondrion, plastid	26.13	33.89
TraesCS3D01G441000.1	Wheat	mitochondrion	31.29	33.45
TraesCS3D01G441300.1	Wheat	mitochondrion	30.97	33.1
TraesCS3B01G484600.1	Wheat	cytosol	29.03	32.73
TraesCS3A01G448500.1	Wheat	mitochondrion	30.32	32.08
TraesCS4D01G018100.1	Wheat	mitochondrion, nucleus	31.29	32.01
TraesCS7D01G431300.1	Wheat	mitochondrion	31.94	31.63
HORVU4Hr1G003180.3	Barley	mitochondrion	31.29	31.6
TraesCS6D01G073600.1	Wheat	cytosol, nucleus, plastid	27.1	31.0
TraesCS4B01G019600.1	Wheat	mitochondrion	30.65	30.65
TraesCS4A01G293700.1	Wheat	mitochondrion	30.32	30.52
HORVU7Hr1G100520.1	Barley	cytosol, mitochondrion	30.0	30.29
TraesCS7A01G442300.1	Wheat	mitochondrion	30.97	30.28
TraesCS7B01G340600.1	Wheat	mitochondrion	30.32	30.13
TraesCS7B01G340700.1	Wheat	mitochondrion	30.32	30.13
Zm00001d013571_P001	Maize	cytosol, nucleus, plastid	31.94	30.0
HORVU7Hr1G100540.2	Barley	mitochondrion	29.35	29.93
TraesCS7B01G340500.1	Wheat	mitochondrion	30.32	29.84
EER91098	Sorghum	nucleus	33.87	29.58
HORVU6Hr1G021880.1	Barley	plastid	24.84	29.5
HORVU6Hr1G021960.1	Barley	plastid	24.84	29.5
TraesCS7A01G441900.1	Wheat	mitochondrion	30.0	29.43
TraesCS6B01G149100.1	Wheat	nucleus	24.52	28.9
TraesCS6A01G120700.1	Wheat	nucleus	24.19	28.52
TraesCS7A01G442100.1	Wheat	mitochondrion	28.71	28.34
TraesCS7D01G431200.1	Wheat	mitochondrion	28.06	28.25
TraesCS6D01G110700.1	Wheat	nucleus	23.87	28.14
TraesCS7D01G431100.1	Wheat	mitochondrion, nucleus	28.06	27.71
Zm00001d033419_P001	Maize	plastid	22.58	25.0
KRH77271	Soybean	plastid	25.48	24.53
KRH57556	Soybean	nucleus	27.42	24.29
KRH69583	Soybean	nucleus	26.13	24.04
KRH28216	Soybean	nucleus	25.16	23.71
KRH74575	Soybean	cytosol	25.16	23.15
KRH04275	Soybean	nucleus	26.45	22.97
KRH60696	Soybean	nucleus, plastid	21.61	22.95
KRH24321	Soybean	cytosol	21.29	22.92
KRH51394	Soybean	nucleus	20.32	21.95
KRH29000	Soybean	cytosol	20.32	21.95
KRG94235	Soybean	cytosol	16.45	20.56
KRH15376	Soybean	nucleus, plastid	22.9	20.23
KRH05668	Soybean	nucleus	21.94	19.88

Protein Annotations

EMBL:ACUP02005388	EnsemblPlants:KRH36722	EnsemblPlantsGene:GLYMA_09G019900	EntrezGene:100781461	Gene3D:3.30.40.10	InterPro:E3ligase_BOI_like
InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR42647	PANTHER:PTHR42647:SF12
PFAM:PF13920	PFscan:PS50089	PIRSF:PIRSF036836	ProteinID:KRH36722	ProteinID:KRH36722.1	SEG:seg
UniParc:UPI000233D4D7	UniProt:I1L0B1	MapMan:35.1	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:1561855..1563621

Molecular Weight (calculated)

34904.3 Da

IEP (calculated)

6.306

GRAVY (calculated)

-0.573

Length

310 amino acids

Sequence
(BLAST)

001: MAVEASYMNL LPSQLLTNRE LIKSNQQLQH QLNSDYMYNT TTQMDSSSAL PQPATMPESL LSFYQSNFCD PNKADSGLTY HIPLQRKRSR DFTTELTSLP
101: AHQKNKISSD PSFLNQEILY QFQNQQSEID RVLAHHTEKV RMELEEQKMR QSRMFVSAIQ EAMAKKLKEK DQEIQRMGKL NWALQERVKS LCMENQIWRE
201: LAQTNESTAN YLRSNLEQVL AHVGEERATV GDDAQSSCGS NDAAEAGNDT AASAAATGRG RLCKNCGLRE SVVLLLPCRH LCLCTMCGST VRNCPICDSD
301: MDASVHVNLS

Best Arabidopsis Sequence Match ( AT4G19700.1 )
(BLAST)

001: MAVQAHHMNI FSQFISPNRD CVKFQENMNH GEFEFTGGEV PLITGESFAV EPLAAKANFN KAESGLSYNF TVPPLSTKRQ RDFQFSDSNA PVKRRSVAFD
101: SSSPSLINVE LVSQIQNQQQ SEIDRFVAQQ TEKLRIEIEA RQQTQTRMLA SAVQNVIAKK LKEKDDEIVR IRNLNWVLQE RVKSLYVENQ IWRDIAQTNE
201: ANANTLRTNL DQVLAQLETF PTASAVVEDD AESSCGSCCG DGGGEAVTAV GGGCKRCGER EASVLVLPCR HLCLCTVCGG SALLRTCPVC DMVMNASVHV
301: NMSS

Arabidopsis Description

BOIE3 ubiquitin-protein ligase BOI [Source:UniProtKB/Swiss-Prot;Acc:O81851]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.