CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89812
KRG92626
KRG94975
KRG97048
KRG97049
KRH13399
KRH18664
KRH20755
KRH34156
KRH62918
KRH68797

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24570.1	KRG89812	AT3G56800.1	15733871
AT2G24570.1	KRG94975	AT3G56800.1	15733871
AT2G24570.1	KRH18664	AT3G56800.1	15733871
AT2G24570.1	KRH13399	AT5G13810.1	21798944
AT2G24570.1	KRH20755	AT5G13810.1	21798944
AT2G24570.1	KRH62918	AT5G13810.1	21798944
AT2G24570.1	KRG92626	AT5G28900.1	21798944
AT2G24570.1	KRG97048	AT5G28900.1	21798944
AT2G24570.1	KRG97049	AT5G28900.1	21798944
AT2G24570.1	KRH34156	AT5G28900.1	21798944
AT2G24570.1	KRH68797	AT5G28900.1	21798944
AT4G31550.1	KRG89812	AT3G56800.1	15733871
AT4G31550.1	KRG94975	AT3G56800.1	15733871
AT4G31550.1	KRH18664	AT3G56800.1	15733871

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH19120	Soybean	nucleus	92.19	91.05
KRH37367	Soybean	nucleus	63.12	68.24
KRH12362	Soybean	nucleus	59.69	65.19
KRH52606	Soybean	nucleus	55.31	59.0
KRH61946	Soybean	nucleus, plastid	49.38	56.63
CDY20325	Canola	nucleus	50.0	56.54
CDX68763	Canola	nucleus	52.19	56.04
CDY60852	Canola	nucleus	52.19	56.04
CDX72310	Canola	nucleus	49.38	55.63
CDY36432	Canola	nucleus	48.75	55.32
CDY13441	Canola	nucleus	50.31	54.95
Bra011282.1-P	Field mustard	nucleus	54.69	54.35
AT4G31550.1	Thale cress	nucleus	55.0	54.15
KRH16144	Soybean	nucleus	53.44	54.11
CDY23304	Canola	nucleus	51.25	53.59
KRH04945	Soybean	nucleus	52.5	53.16
AT2G24570.1	Thale cress	nucleus	52.81	52.65
CDY45583	Canola	nucleus	53.12	52.31
Bra023998.1-P	Field mustard	nucleus	53.44	52.13
Bra032084.1-P	Field mustard	nucleus	52.5	51.69
Bra010231.1-P	Field mustard	nucleus	53.44	51.51
PGSC0003DMT400075531	Potato	nucleus	50.0	51.28
PGSC0003DMT400024632	Potato	nucleus	52.19	50.0
Solyc08g006320.2.1	Tomato	nucleus	51.25	50.0
KRH28430	Soybean	nucleus	44.38	44.24
KRH04545	Soybean	nucleus	45.31	43.67
KRH77042	Soybean	nucleus	43.75	43.61
KRH57965	Soybean	nucleus	45.31	43.41
Solyc12g096350.1.1	Tomato	nucleus	45.62	43.2
KRH67313	Soybean	nucleus	35.62	33.43
KRH71315	Soybean	nucleus	36.88	33.24
KRH05637	Soybean	nucleus	28.44	32.73
KRH32116	Soybean	extracellular	36.56	29.85
KRH15403	Soybean	cytosol, nucleus, plastid	23.44	27.17
KRH27887	Soybean	nucleus	16.88	25.23
KRH27073	Soybean	nucleus	19.38	23.57
KRH22261	Soybean	nucleus	19.38	23.4
KRH77587	Soybean	nucleus	16.56	21.63
KRH59007	Soybean	nucleus	17.19	21.57
KRH68270	Soybean	nucleus	16.88	21.34
KRH42896	Soybean	nucleus	17.19	21.07
KRH35230	Soybean	nucleus	18.44	19.87
KRH59972	Soybean	nucleus	17.81	19.79
KRH06582	Soybean	nucleus	20.31	19.4
KRG91594	Soybean	nucleus	19.38	19.31
KRH41244	Soybean	nucleus	17.19	18.84
KRG96534	Soybean	nucleus	16.56	18.66
KRH08822	Soybean	nucleus, plastid	14.69	18.29
KRH40377	Soybean	nucleus	19.06	17.53
KRH00856	Soybean	nucleus	19.06	17.38
KRH42254	Soybean	nucleus	23.12	17.25
KRH58373	Soybean	nucleus	22.19	16.51
KRH38335	Soybean	nucleus	19.06	16.4
KRH08826	Soybean	nucleus	18.75	14.71
KRH36880	Soybean	nucleus	22.19	13.81
KRH11863	Soybean	nucleus	22.5	13.77

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	EMBL:ACUP02010321	EMBL:BT098154	UniProt:C6TKE5	EnsemblPlantsGene:GLYMA_17G057100
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657
InterPro:IPR036576	EnsemblPlants:KRH02746	ProteinID:KRH02746	ProteinID:KRH02746.1	PFAM:PF03106	PFAM:PF10533
PFscan:PS50811	PANTHER:PTHR31282	PANTHER:PTHR31282:SF18	SMART:SM00774	SUPFAM:SSF118290	UniParc:UPI000189D05E
InterPro:WRKY_dom	InterPro:WRKY_dom_sf	InterPro:Zn-cluster-dom	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr17:-:4328277..4330070

Molecular Weight (calculated)

34824.3 Da

IEP (calculated)

10.368

GRAVY (calculated)

-0.601

Length

320 amino acids

Sequence
(BLAST)

001: MAVDLANIRM EENMAIQEAA SAGLKSMEHL IRVLSSQIPS ASSSSSNAHH HRLNLNHLDC AEITDFTVSK FKQVINLLNR TGHARFRRAP SHPSPSISPS
101: QPQPQPQPQP QTLTLDFAKP VMVKSNPNPN PSSTDLSVSQ YSKTKDTTTF SISPPMSTTT SSFLSSITAD GSVSDGKIGP AILAAGKPPL SSSHRKRCHD
201: ATLSAGKASS SAHCHCSKRR KSRVKRMIRV PAISSKIADI PADEYSWRKY GQKPIKGSPY PRGYYKCSSV RGCPARKHVE RAQDDPNMLI VTYEGEHRHP
301: QPRLPETSAG AAADFVSQPV

Best Arabidopsis Sequence Match ( AT2G23320.1 )
(BLAST)

001: MAVELMTRNY ISGVGADSFA VQEAAASGLK SIENFIGLMS RDSFNSDQPS SSSASASASA AADLESARNT TADAAVSKFK RVISLLDRTR TGHARFRRAP
101: VHVISPVLLQ EEPKTTPFQS PLPPPPQMIR KGSFSSSMKT IDFSSLSSVT TESDNQKKIH HHQRPSETAP FASQTQSLST TVSSFSKSTK RKCNSENLLT
201: GKCASASSSG RCHCSKKRKI KQRRIIRVPA ISAKMSDVPP DDYSWRKYGQ KPIKGSPHPR GYYKCSSVRG CPARKHVERA ADDSSMLIVT YEGDHNHSLS
301: AADLAGAAVA DLILESS

Arabidopsis Description

WRKY15Probable WRKY transcription factor 15 [Source:UniProtKB/Swiss-Prot;Acc:O22176]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.