Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
21132161
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH01744 | Soybean | nucleus | 74.62 | 70.32 |
| GSMUA_Achr8P09080_001 | Banana | nucleus | 53.21 | 63.04 |
| CDY22251 | Canola | cytosol | 26.61 | 56.49 |
| CDX83484 | Canola | nucleus | 54.43 | 55.28 |
| VIT_05s0102g00080.t01 | Wine grape | nucleus | 56.88 | 54.71 |
| AT2G43370.1 | Thale cress | nucleus | 55.66 | 54.65 |
| Bra000304.1-P | Field mustard | nucleus | 53.52 | 54.52 |
| CDY44222 | Canola | nucleus | 52.6 | 53.92 |
| PGSC0003DMT400055636 | Potato | nucleus | 56.57 | 52.56 |
| CDY14697 | Canola | cytosol, mitochondrion | 29.05 | 52.49 |
| Solyc09g098390.2.1 | Tomato | nucleus | 55.35 | 50.99 |
| CDY23361 | Canola | endoplasmic reticulum | 38.53 | 49.41 |
| Os09t0513700-01 | Rice | nucleus | 55.05 | 48.0 |
| TraesCS5D01G304800.1 | Wheat | nucleus | 55.05 | 42.96 |
| TraesCS5A01G298000.1 | Wheat | nucleus | 55.96 | 41.12 |
| EER97037 | Sorghum | nucleus | 54.74 | 40.96 |
| TraesCS5B01G297000.2 | Wheat | nucleus | 54.74 | 38.09 |
| HORVU5Hr1G078170.27 | Barley | nucleus | 51.68 | 36.58 |
| Zm00001d021137_P002 | Maize | nucleus | 42.2 | 28.22 |
| KRH76798 | Soybean | nucleus | 29.05 | 19.75 |
| KRH28659 | Soybean | nucleus | 29.05 | 19.71 |
| KRH69931 | Soybean | cytosol, mitochondrion, nucleus | 11.01 | 18.46 |
Protein Annotations
| EntrezGene:100807978 | MapMan:16.4.4.1.1 | Gene3D:3.30.70.330 | UniProt:A0A0R0IXL2 | EMBL:ACUP02005368 | EnsemblPlantsGene:GLYMA_08G366200 |
| GO:GO:0000243 | GO:GO:0000398 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005689 |
| GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0017069 | GO:GO:0071011 |
| InterPro:IPR000504 | InterPro:IPR012677 | EnsemblPlants:KRH46935 | ProteinID:KRH46935 | ProteinID:KRH46935.1 | InterPro:Nucleotide-bd_a/b_plait_sf |
| PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR13952 | PANTHER:PTHR13952:SF6 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0006EDED5E | SEG:seg | InterPro:snRNP35_RRM | : |
Description
hypothetical protein
Coordinates
chr8:-:47710961..47715209
Molecular Weight (calculated)
37824.0 Da
IEP (calculated)
10.262
GRAVY (calculated)
-1.274
Length
327 amino acids
Sequence
(BLAST)
(BLAST)
001: MSVRSKNLNS VFYADSYHPI QAGSIDGTDV VPHDNAVYRA QLCSSIGLYD PFGDPRAAGD PYCTLFVARL SRLTNEDNLR KVMSKYGRVK NFRLVRDIVT
101: GASRGYAFVE YETEREMRRA YMDAHHLIVD DSEIIVDYNR QQLMPGWIPR RLGGGLSGKK ESGQLRFGGK EKPFRAPLKP IPYEELKKLG IPPPPEGRYM
201: SRFQVPSPPR RERNLSDREE DSHSHRRGSN DRNRTEDSHR SSVDIGEGHC RSSSHRDDHS RGRSSLERSG RYHDRSSSEK EHRYRSSTDK DKHSQKRKES
301: DRSSSEKEHQ YRSSTDKDKH SRKRKRK
101: GASRGYAFVE YETEREMRRA YMDAHHLIVD DSEIIVDYNR QQLMPGWIPR RLGGGLSGKK ESGQLRFGGK EKPFRAPLKP IPYEELKKLG IPPPPEGRYM
201: SRFQVPSPPR RERNLSDREE DSHSHRRGSN DRNRTEDSHR SSVDIGEGHC RSSSHRDDHS RGRSSLERSG RYHDRSSSEK EHRYRSSTDK DKHSQKRKES
301: DRSSSEKEHQ YRSSTDKDKH SRKRKRK
001: MSGGGNNVVN KVFYATSYHP IQAGSIDGTD VAPHDNGVRR ALLCYNAGLY DPSGDSKAVG DPYCTLFVGR LSHHTTEDTL REVMSKYGRI KNLRLVRHIV
101: TGASRGYGFV EYETEKEMLR AYEDAHHSLI DGREIIVDYN RQQLMPGWIP RRLGGGLGGR KESGQLRFGG RDRPFRAPLR PIPHEDLKKL GIQLPPEGRY
201: MSRTQIPSPP RRKGSVSDRE EEYYREKSSV EREEEFKERS SLRSYHSHRS SAHTHSSHRR RSKDREECSR EESRSDRKER ARGMEDRYGD NKGEVSGSKR
301: SKRSEEDRSR KRHKHLPSHH HRRSYSQDHH SSD
101: TGASRGYGFV EYETEKEMLR AYEDAHHSLI DGREIIVDYN RQQLMPGWIP RRLGGGLGGR KESGQLRFGG RDRPFRAPLR PIPHEDLKKL GIQLPPEGRY
201: MSRTQIPSPP RRKGSVSDRE EEYYREKSSV EREEEFKERS SLRSYHSHRS SAHTHSSHRR RSKDREECSR EESRSDRKER ARGMEDRYGD NKGEVSGSKR
301: SKRSEEDRSR KRHKHLPSHH HRRSYSQDHH SSD
Arabidopsis Description
SNRNP35U11/U12 small nuclear ribonucleoprotein 35 kDa protein [Source:UniProtKB/Swiss-Prot;Acc:Q8VY74]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.