CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH10674
KRH21674

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G53800.1	KRH10674	AT4G33690.1	21798944
AT5G53800.1	KRH21674	AT4G33690.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH27228	Soybean	nucleus	80.26	80.69
Bra003034.1-P	Field mustard	nucleus	39.47	68.81
CDY14351	Canola	nucleus	39.47	68.81
VIT_10s0003g05270.t01	Wine grape	cytosol	14.47	65.48
VIT_19s0014g02930.t01	Wine grape	nucleus	54.74	63.22
VIT_10s0003g03350.t01	Wine grape	cytosol	13.95	63.1
Solyc12g013790.1.1	Tomato	nucleus	47.63	56.92
PGSC0003DMT400039740	Potato	nucleus	47.63	56.56
GSMUA_Achr11P...	Banana	nucleus	47.89	54.49
KXG26776	Sorghum	nucleus	47.89	53.37
Os04t0530300-01	Rice	nucleus	48.68	51.82
TraesCS2A01G372800.1	Wheat	nucleus	46.32	50.87
Zm00001d002857_P001	Maize	nucleus	45.79	50.58
TraesCS2D01G369000.1	Wheat	nucleus	46.05	50.58
TraesCS2B01G389800.1	Wheat	nucleus	46.05	50.29
AT5G53800.1	Thale cress	nucleus	45.26	49.0
CDY20218	Canola	nucleus	48.95	43.56

Protein Annotations

EMBL:ACUP02008380	EnsemblPlants:KRH22108	EnsemblPlantsGene:GLYMA_13G278100	EntrezGene:100778706	ncoils:Coil	ProteinID:KRH22108
ProteinID:KRH22108.1	SEG:seg	UniParc:UPI000233B80A	UniProt:I1M397	MapMan:35.2	:

Description

hypothetical protein

Coordinates

chr13:+:37917083..37923020

Molecular Weight (calculated)

45668.6 Da

IEP (calculated)

10.521

GRAVY (calculated)

-2.017

Length

380 amino acids

Sequence
(BLAST)

001: MSRDANRNGA MSKNAENDED EAPSRRDSRK SRENSDVDSE FDRKHNNSRR GSSDSEDGDR RRRRNRKSRR RYCSESESGS DSGKAREHSE TDRKHSNSRR
101: KSRGGSSDSD EGDRAHRRKR KSRRRYSSES DSDSGSEESE SERSGSESES EEERKRREKR RRREKEDERE RKRRRREKEK KRRRREKEEE ERRKKEKLKK
201: KKKKKEKEER GKGAVTNSWG KYGVIRETDM WTKRPEFTAW LAEVKQVNLE NMSNWEEKQM FKEFMEDHNT ATFPSKKYYN LDAYYRREME KEMKKGFKKV
301: QATERTIFND EEQRRQELLQ AREKHKEEQV MALKHSMQTG MAQAMKEQAQ LREEMAYQYK LGNFEAAAAI QRRLDPDAAI

Best Arabidopsis Sequence Match ( AT5G53800.1 )
(BLAST)

001: MGSDRDGAPP ENTKREVEDR DIRRKSSREK PSGSGKDSGE EKDVSRRRES KRRTKDGNDS GSESGLESGS ESEKEERRRS RKDRGKRKSD RKSSRSRRRR
101: RDYSSSSSDS ESESESEYSD SEESESEDER RRRKRKRKER EEEEKERKRR RREKDKKKRN KSDKDGDKKR KEKKKKKSEK VKKGAVTESW GKYGIIRETD
201: MWNKRPEFTA WLLEVKKVNL ESLPPWEEKK MFKDFMEDHN TGTFTSKKYY DIDGYYRLKL EKEMKKGLKK AGISERTVFN DEEQRRLEMQ ELRERQKEEE
301: VLALKRSMEG GMAQAMKEQA RLKEEMVYLY KIGDMEGAAA IQRRLDPDVP M

Arabidopsis Description

unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). [Source:TAIR;Acc:AT5G53800]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.