Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc01g106560.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G53800.1 | Solyc01g106560.2.1 | AT4G33690.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400039740 | Potato | nucleus | 88.99 | 88.44 |
| VIT_10s0003g05270.t01 | Wine grape | cytosol | 17.61 | 66.67 |
| VIT_10s0003g03350.t01 | Wine grape | cytosol | 16.98 | 64.29 |
| Bra003034.1-P | Field mustard | nucleus | 43.4 | 63.3 |
| CDY14351 | Canola | nucleus | 43.4 | 63.3 |
| VIT_19s0014g02930.t01 | Wine grape | nucleus | 62.26 | 60.18 |
| GSMUA_Achr11P... | Banana | nucleus | 55.97 | 53.29 |
| KXG26776 | Sorghum | nucleus | 56.29 | 52.49 |
| TraesCS2A01G372800.1 | Wheat | nucleus | 55.35 | 50.87 |
| TraesCS2D01G369000.1 | Wheat | nucleus | 55.03 | 50.58 |
| AT5G53800.1 | Thale cress | nucleus | 55.66 | 50.43 |
| TraesCS2B01G389800.1 | Wheat | nucleus | 55.03 | 50.29 |
| Zm00001d002857_P001 | Maize | nucleus | 53.77 | 49.71 |
| Os04t0530300-01 | Rice | nucleus | 54.09 | 48.18 |
| KRH22108 | Soybean | nucleus | 56.92 | 47.63 |
| KRH27228 | Soybean | nucleus | 55.03 | 46.3 |
| CDY20218 | Canola | nucleus | 53.77 | 40.05 |
Protein Annotations
| EnsemblPlants:Solyc12g013790.1.1 | EnsemblPlantsGene:Solyc12g013790.1 | ncoils:Coil | PANTHER:PTHR34689 | SEG:seg | UniParc:UPI000276A4B9 |
| UniProt:K4DCR4 | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr12:-:4588483..4591740
Molecular Weight (calculated)
38495.8 Da
IEP (calculated)
10.336
GRAVY (calculated)
-1.943
Length
318 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKERVKASE DENGATPSKR QHKSKSKRED ESESEPEREV RKHRRKRSRS SRRRSRDDYD DSDSSSSGED SYSDSEDSYS DSESGSSSEY SDSEEERRRR
101: KRRDRKRREE KEREKKRKLR KEKEKEKKKR RKKEKEKKER KKKKKEKGKT GAVTNSWGKY GIIKETDMWN KRPEFTAWLA EIKKVNLESL PNWEEKQLFK
201: QFMEDHNTAT FPSKKYYNLD AYYRRKMEKE SRRGVKKVVD DERTVFDDEE QRRQELMRER EKHKQEQVET LKREMQSGMA QAMKEQAQLR EEMAYQYKLG
301: NFEAAAAIQR RLDPDLPM
101: KRRDRKRREE KEREKKRKLR KEKEKEKKKR RKKEKEKKER KKKKKEKGKT GAVTNSWGKY GIIKETDMWN KRPEFTAWLA EIKKVNLESL PNWEEKQLFK
201: QFMEDHNTAT FPSKKYYNLD AYYRRKMEKE SRRGVKKVVD DERTVFDDEE QRRQELMRER EKHKQEQVET LKREMQSGMA QAMKEQAQLR EEMAYQYKLG
301: NFEAAAAIQR RLDPDLPM
001: MGSDRDGAPP ENTKREVEDR DIRRKSSREK PSGSGKDSGE EKDVSRRRES KRRTKDGNDS GSESGLESGS ESEKEERRRS RKDRGKRKSD RKSSRSRRRR
101: RDYSSSSSDS ESESESEYSD SEESESEDER RRRKRKRKER EEEEKERKRR RREKDKKKRN KSDKDGDKKR KEKKKKKSEK VKKGAVTESW GKYGIIRETD
201: MWNKRPEFTA WLLEVKKVNL ESLPPWEEKK MFKDFMEDHN TGTFTSKKYY DIDGYYRLKL EKEMKKGLKK AGISERTVFN DEEQRRLEMQ ELRERQKEEE
301: VLALKRSMEG GMAQAMKEQA RLKEEMVYLY KIGDMEGAAA IQRRLDPDVP M
101: RDYSSSSSDS ESESESEYSD SEESESEDER RRRKRKRKER EEEEKERKRR RREKDKKKRN KSDKDGDKKR KEKKKKKSEK VKKGAVTESW GKYGIIRETD
201: MWNKRPEFTA WLLEVKKVNL ESLPPWEEKK MFKDFMEDHN TGTFTSKKYY DIDGYYRLKL EKEMKKGLKK AGISERTVFN DEEQRRLEMQ ELRERQKEEE
301: VLALKRSMEG GMAQAMKEQA RLKEEMVYLY KIGDMEGAAA IQRRLDPDVP M
Arabidopsis Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). [Source:TAIR;Acc:AT5G53800]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.