Factsheet for Os04t0530300-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os07t0213400-01
Os08t0192200-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G53800.1	Os07t0213400-01	AT4G33690.1	21798944
AT5G53800.1	Os08t0192200-01	AT4G33690.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG26776	Sorghum	nucleus	79.83	83.58
Zm00001d002857_P001	Maize	nucleus	76.75	79.65
TraesCS2B01G389800.1	Wheat	nucleus	75.91	77.87
TraesCS2D01G369000.1	Wheat	nucleus	75.07	77.46
TraesCS2A01G372800.1	Wheat	nucleus	75.07	77.46
Bra003034.1-P	Field mustard	nucleus	40.34	66.06
CDY14351	Canola	nucleus	40.34	66.06
GSMUA_Achr11P...	Banana	nucleus	53.5	57.19
VIT_19s0014g02930.t01	Wine grape	nucleus	51.54	55.93
PGSC0003DMT400039740	Potato	nucleus	49.58	55.31
Solyc12g013790.1.1	Tomato	nucleus	48.18	54.09
VIT_10s0003g05270.t01	Wine grape	cytosol	12.61	53.57
VIT_19s0014g02960.t01	Wine grape	cytosol	5.32	52.78
VIT_10s0003g03350.t01	Wine grape	cytosol	12.04	51.19
AT5G53800.1	Thale cress	nucleus	48.74	49.57
KRH22108	Soybean	nucleus	51.82	48.68
KRH27228	Soybean	nucleus	50.7	47.88
CDY20218	Canola	nucleus	49.58	41.45
VIT_19s0014g02940.t01	Wine grape	extracellular	9.24	37.08

Protein Annotations

EnsemblPlants:Os04t0530300-01	EnsemblPlantsGene:Os04g0530300	EntrezGene:4336481	ncoils:Coil	PANTHER:PTHR34689	ProteinID:BAF15302.1
ProteinID:BAS90206.1	ProteinID:CAD41208.2	ProteinID:CAE03861.2	ProteinID:EEE61387.1	RefSeq:XP_015635850.1	SEG:seg
UniParc:UPI000021C898	UniProt:Q7X8Y1	MapMan:35.2	:	:	:

Description

Similar to OSIGBa0155K17.11 protein. (Os04t0530300-01)

Coordinates

chr4:-:26524261..26528367

Molecular Weight (calculated)

42670.5 Da

IEP (calculated)

10.449

GRAVY (calculated)

-1.874

Length

357 amino acids

Sequence
(BLAST)

001: MAKDQNGSAA GEGEAAAAVA ARSRSKSIEA DEEERSKGRR DRDRDRRGKS KRREEEEEEE EEEGDAGSES SGEDSGERRK RRRKEKERRH RRRRSRSASS
101: GSSSESESES ESSYSDCSAG SESETDSEEE RRRRRRRRRR KEREEEERRR RRKDKERRKR KEKERERERK KKEKKKRRKE EKKNLGKKAA VTNSWGKYGI
201: IREVDMWNKR PEFTAWLSEV KQVNLEALSN WEEKQMFKEF MEDHNTATFP SKKYYDLDAY HRRVMEKEKK KGLKNALGTE RTVFNDEEQR RLELLRERER
301: QKEEEVAALK RSMQTGMAQA MKEQARLREE MMYQYRLGNF EAAAAIQKRL DPDAPLQ

Best Arabidopsis Sequence Match ( AT5G53800.1 )
(BLAST)

001: MGSDRDGAPP ENTKREVEDR DIRRKSSREK PSGSGKDSGE EKDVSRRRES KRRTKDGNDS GSESGLESGS ESEKEERRRS RKDRGKRKSD RKSSRSRRRR
101: RDYSSSSSDS ESESESEYSD SEESESEDER RRRKRKRKER EEEEKERKRR RREKDKKKRN KSDKDGDKKR KEKKKKKSEK VKKGAVTESW GKYGIIRETD
201: MWNKRPEFTA WLLEVKKVNL ESLPPWEEKK MFKDFMEDHN TGTFTSKKYY DIDGYYRLKL EKEMKKGLKK AGISERTVFN DEEQRRLEMQ ELRERQKEEE
301: VLALKRSMEG GMAQAMKEQA RLKEEMVYLY KIGDMEGAAA IQRRLDPDVP M

Arabidopsis Description

unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). [Source:TAIR;Acc:AT5G53800]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.