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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • mitochondrion 1
  • plastid 1
PPI

Inferred distinct locusB in Crop

locusBlocations
PGSC0003DMT400013080

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G53800.1 PGSC0003DMT400013080 AT4G33690.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc12g013790.1.1 Tomato nucleus 88.44 88.99
VIT_10s0003g05270.t01 Wine grape cytosol 17.5 66.67
VIT_10s0003g03350.t01 Wine grape cytosol 16.88 64.29
Bra003034.1-P Field mustard nucleus 43.75 64.22
CDY14351 Canola nucleus 43.75 64.22
VIT_19s0014g02930.t01 Wine grape nucleus 60.0 58.36
GSMUA_Achr11P... Banana nucleus 55.94 53.59
KXG26776 Sorghum nucleus 56.56 53.08
TraesCS2A01G372800.1 Wheat nucleus 55.62 51.45
Zm00001d002857_P001 Maize nucleus 54.69 50.87
TraesCS2B01G389800.1 Wheat nucleus 55.31 50.86
TraesCS2D01G369000.1 Wheat nucleus 54.69 50.58
Os04t0530300-01 Rice nucleus 55.31 49.58
AT5G53800.1 Thale cress nucleus 53.75 49.0
KRH22108 Soybean nucleus 56.56 47.63
KRH27228 Soybean nucleus 54.38 46.03
CDY20218 Canola nucleus 54.06 40.52
Protein Annotations
EnsemblPlants:PGSC0003DMT400039740EnsemblPlantsGene:PGSC0003DMG400015358EntrezGene:102588621ncoils:CoilPANTHER:PTHR34689PGSC:PGSC0003DMG400015358
RefSeq:XP_006358982.1SEG:segUniParc:UPI0002960028UniProt:M1B8N8MapMan:35.2:
Description
Nucleic acid binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400015358]
Coordinates
chr12:+:633285..636990
Molecular Weight (calculated)
38422.8 Da
IEP (calculated)
10.310
GRAVY (calculated)
-1.871
Length
320 amino acids
Sequence
(BLAST)
001: MAKEGANASE DENGAAPSKR QHKSKSKRED ETESESKSGS EREREVRKHR RKRSRSRSSR RRSRDDSYSS SSGEDSYSDS EDSYSDSESG SSSEYSDSEE
101: ERRRRKRRDR KRREEKEKEK KRKLRKEKEK KKRRKKEKEK ERKKKKKEKG KTGAVTNSWG KYGIIKETDM WNKRPEFTAW LAEIKKVNLE SLPNWEEKQL
201: FKQFMEDHNT ATFPSKKYYN LDAYYRRKME KECRRGVKKV MDDERTVFDD EEQRRQELMR EREKHKQEQV EALKCEMQSG MAQAMKEQAQ LREEMAYQYK
301: LGNFEAAAAI QRRLDPDLPM
Best Arabidopsis Sequence Match ( AT5G53800.1 )
(BLAST)
001: MGSDRDGAPP ENTKREVEDR DIRRKSSREK PSGSGKDSGE EKDVSRRRES KRRTKDGNDS GSESGLESGS ESEKEERRRS RKDRGKRKSD RKSSRSRRRR
101: RDYSSSSSDS ESESESEYSD SEESESEDER RRRKRKRKER EEEEKERKRR RREKDKKKRN KSDKDGDKKR KEKKKKKSEK VKKGAVTESW GKYGIIRETD
201: MWNKRPEFTA WLLEVKKVNL ESLPPWEEKK MFKDFMEDHN TGTFTSKKYY DIDGYYRLKL EKEMKKGLKK AGISERTVFN DEEQRRLEMQ ELRERQKEEE
301: VLALKRSMEG GMAQAMKEQA RLKEEMVYLY KIGDMEGAAA IQRRLDPDVP M
Arabidopsis Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). [Source:TAIR;Acc:AT5G53800]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.