Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- plastid 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
PGSC0003DMT400013080 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT5G53800.1 | PGSC0003DMT400013080 | AT4G33690.1 | 21798944 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Solyc12g013790.1.1 | Tomato | nucleus | 88.44 | 88.99 |
VIT_10s0003g05270.t01 | Wine grape | cytosol | 17.5 | 66.67 |
VIT_10s0003g03350.t01 | Wine grape | cytosol | 16.88 | 64.29 |
Bra003034.1-P | Field mustard | nucleus | 43.75 | 64.22 |
CDY14351 | Canola | nucleus | 43.75 | 64.22 |
VIT_19s0014g02930.t01 | Wine grape | nucleus | 60.0 | 58.36 |
GSMUA_Achr11P... | Banana | nucleus | 55.94 | 53.59 |
KXG26776 | Sorghum | nucleus | 56.56 | 53.08 |
TraesCS2A01G372800.1 | Wheat | nucleus | 55.62 | 51.45 |
Zm00001d002857_P001 | Maize | nucleus | 54.69 | 50.87 |
TraesCS2B01G389800.1 | Wheat | nucleus | 55.31 | 50.86 |
TraesCS2D01G369000.1 | Wheat | nucleus | 54.69 | 50.58 |
Os04t0530300-01 | Rice | nucleus | 55.31 | 49.58 |
AT5G53800.1 | Thale cress | nucleus | 53.75 | 49.0 |
KRH22108 | Soybean | nucleus | 56.56 | 47.63 |
KRH27228 | Soybean | nucleus | 54.38 | 46.03 |
CDY20218 | Canola | nucleus | 54.06 | 40.52 |
Protein Annotations
EnsemblPlants:PGSC0003DMT400039740 | EnsemblPlantsGene:PGSC0003DMG400015358 | EntrezGene:102588621 | ncoils:Coil | PANTHER:PTHR34689 | PGSC:PGSC0003DMG400015358 |
RefSeq:XP_006358982.1 | SEG:seg | UniParc:UPI0002960028 | UniProt:M1B8N8 | MapMan:35.2 | : |
Description
Nucleic acid binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400015358]
Coordinates
chr12:+:633285..636990
Molecular Weight (calculated)
38422.8 Da
IEP (calculated)
10.310
GRAVY (calculated)
-1.871
Length
320 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKEGANASE DENGAAPSKR QHKSKSKRED ETESESKSGS EREREVRKHR RKRSRSRSSR RRSRDDSYSS SSGEDSYSDS EDSYSDSESG SSSEYSDSEE
101: ERRRRKRRDR KRREEKEKEK KRKLRKEKEK KKRRKKEKEK ERKKKKKEKG KTGAVTNSWG KYGIIKETDM WNKRPEFTAW LAEIKKVNLE SLPNWEEKQL
201: FKQFMEDHNT ATFPSKKYYN LDAYYRRKME KECRRGVKKV MDDERTVFDD EEQRRQELMR EREKHKQEQV EALKCEMQSG MAQAMKEQAQ LREEMAYQYK
301: LGNFEAAAAI QRRLDPDLPM
101: ERRRRKRRDR KRREEKEKEK KRKLRKEKEK KKRRKKEKEK ERKKKKKEKG KTGAVTNSWG KYGIIKETDM WNKRPEFTAW LAEIKKVNLE SLPNWEEKQL
201: FKQFMEDHNT ATFPSKKYYN LDAYYRRKME KECRRGVKKV MDDERTVFDD EEQRRQELMR EREKHKQEQV EALKCEMQSG MAQAMKEQAQ LREEMAYQYK
301: LGNFEAAAAI QRRLDPDLPM
001: MGSDRDGAPP ENTKREVEDR DIRRKSSREK PSGSGKDSGE EKDVSRRRES KRRTKDGNDS GSESGLESGS ESEKEERRRS RKDRGKRKSD RKSSRSRRRR
101: RDYSSSSSDS ESESESEYSD SEESESEDER RRRKRKRKER EEEEKERKRR RREKDKKKRN KSDKDGDKKR KEKKKKKSEK VKKGAVTESW GKYGIIRETD
201: MWNKRPEFTA WLLEVKKVNL ESLPPWEEKK MFKDFMEDHN TGTFTSKKYY DIDGYYRLKL EKEMKKGLKK AGISERTVFN DEEQRRLEMQ ELRERQKEEE
301: VLALKRSMEG GMAQAMKEQA RLKEEMVYLY KIGDMEGAAA IQRRLDPDVP M
101: RDYSSSSSDS ESESESEYSD SEESESEDER RRRKRKRKER EEEEKERKRR RREKDKKKRN KSDKDGDKKR KEKKKKKSEK VKKGAVTESW GKYGIIRETD
201: MWNKRPEFTA WLLEVKKVNL ESLPPWEEKK MFKDFMEDHN TGTFTSKKYY DIDGYYRLKL EKEMKKGLKK AGISERTVFN DEEQRRLEMQ ELRERQKEEE
301: VLALKRSMEG GMAQAMKEQA RLKEEMVYLY KIGDMEGAAA IQRRLDPDVP M
Arabidopsis Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). [Source:TAIR;Acc:AT5G53800]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.