CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH10674
KRH21674

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G53800.1	KRH10674	AT4G33690.1	21798944
AT5G53800.1	KRH21674	AT4G33690.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH22108	Soybean	nucleus	80.69	80.26
Bra003034.1-P	Field mustard	nucleus	38.62	66.97
CDY14351	Canola	nucleus	38.62	66.97
VIT_10s0003g05270.t01	Wine grape	cytosol	14.29	64.29
VIT_10s0003g03350.t01	Wine grape	cytosol	13.76	61.9
VIT_19s0014g02930.t01	Wine grape	nucleus	53.7	61.7
GSMUA_Achr11P...	Banana	nucleus	48.68	55.09
Solyc12g013790.1.1	Tomato	nucleus	46.3	55.03
PGSC0003DMT400039740	Potato	nucleus	46.03	54.38
KXG26776	Sorghum	nucleus	46.83	51.91
TraesCS2A01G372800.1	Wheat	nucleus	46.56	50.87
Os04t0530300-01	Rice	nucleus	47.88	50.7
TraesCS2D01G369000.1	Wheat	nucleus	46.3	50.58
Zm00001d002857_P001	Maize	nucleus	45.77	50.29
TraesCS2B01G389800.1	Wheat	nucleus	46.3	50.29
AT5G53800.1	Thale cress	nucleus	43.92	47.29
CDY20218	Canola	nucleus	47.62	42.15

Protein Annotations

EMBL:ACUP02007788	EnsemblPlants:KRH27228	EnsemblPlantsGene:GLYMA_12G223300	EntrezGene:100808770	ncoils:Coil	PANTHER:PTHR34689
ProteinID:KRH27228	ProteinID:KRH27228.1	SEG:seg	UniParc:UPI000233CD12	UniProt:I1LUZ8	MapMan:35.2

Description

hypothetical protein

Coordinates

chr12:-:38308723..38313841

Molecular Weight (calculated)

45571.5 Da

IEP (calculated)

10.274

GRAVY (calculated)

-2.003

Length

378 amino acids

Sequence
(BLAST)

001: MSRDENANGS QPESDDDDEA PARRYSRKSR ENSDVDSEPD RKHINSRRGT SDSDDGDRRR RRERKSRRHY CSESDSGSGK AREDSDVDSE TDRKQCNSRR
101: KSQGGRSDSD DGDRTHRRKR KSRRRHSSDF GSEESESERS GSESESEEER KRREKRRRRE KEDEREWKRR RREKERKRRR REKEKEEEER RKKEKLKKKK
201: KKEKEERGKK GAVTNSWGKY GVIRETDMWT KRPEFTAWLA EVKQVNLENM SNWEEKQMFK EFMEDHNTAT FPSKKYYNLD AYYRHQMEKE MKKGFKKVQA
301: TERTVFNDEE QRRQELLQAR EKHKEEQVMA LKHSMQTGMA QAMKEQTQLR EEMAYQYKLG NFEAAAAIQR RLDPDAAI

Best Arabidopsis Sequence Match ( AT5G53800.1 )
(BLAST)

001: MGSDRDGAPP ENTKREVEDR DIRRKSSREK PSGSGKDSGE EKDVSRRRES KRRTKDGNDS GSESGLESGS ESEKEERRRS RKDRGKRKSD RKSSRSRRRR
101: RDYSSSSSDS ESESESEYSD SEESESEDER RRRKRKRKER EEEEKERKRR RREKDKKKRN KSDKDGDKKR KEKKKKKSEK VKKGAVTESW GKYGIIRETD
201: MWNKRPEFTA WLLEVKKVNL ESLPPWEEKK MFKDFMEDHN TGTFTSKKYY DIDGYYRLKL EKEMKKGLKK AGISERTVFN DEEQRRLEMQ ELRERQKEEE
301: VLALKRSMEG GMAQAMKEQA RLKEEMVYLY KIGDMEGAAA IQRRLDPDVP M

Arabidopsis Description

unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). [Source:TAIR;Acc:AT5G53800]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.