Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr7P00820_001 | Banana | cytosol | 21.54 | 43.3 |
| KRH28659 | Soybean | nucleus | 62.05 | 25.1 |
| KRH76798 | Soybean | nucleus | 60.0 | 24.32 |
| VIT_04s0023g01580.t01 | Wine grape | nucleus | 41.54 | 22.75 |
| GSMUA_Achr10P... | Banana | nucleus | 41.03 | 20.51 |
| GSMUA_Achr7P08090_001 | Banana | nucleus | 40.51 | 19.08 |
| Solyc02g085420.2.1 | Tomato | nucleus | 44.1 | 17.99 |
| PGSC0003DMT400038558 | Potato | nucleus | 43.08 | 17.68 |
| TraesCS1A01G176500.1 | Wheat | nucleus | 41.54 | 16.84 |
| TraesCS1D01G162500.1 | Wheat | nucleus | 41.54 | 16.84 |
| TraesCS1B01G203600.1 | Wheat | nucleus | 41.54 | 16.84 |
| TraesCS1B01G146600.1 | Wheat | nucleus | 30.77 | 16.76 |
| HORVU1Hr1G046870.5 | Barley | nucleus | 41.03 | 16.63 |
| Os10t0115600-02 | Rice | nucleus | 37.95 | 15.98 |
| CDX81371 | Canola | nucleus | 33.85 | 15.68 |
| CDY57127 | Canola | plasma membrane | 33.85 | 15.64 |
| EER95096 | Sorghum | nucleus | 36.92 | 14.88 |
| TraesCS1D01G124800.1 | Wheat | nucleus | 36.41 | 14.82 |
| TraesCS1A01G128600.1 | Wheat | nucleus | 35.9 | 14.55 |
| AT3G50670.1 | Thale cress | nucleus | 31.79 | 14.52 |
| EER91800 | Sorghum | nucleus | 34.87 | 13.99 |
| HORVU1Hr1G030660.5 | Barley | nucleus | 34.36 | 13.45 |
| Zm00001d014343_P002 | Maize | nucleus | 36.92 | 12.81 |
| CDY30756 | Canola | nucleus, plastid | 26.15 | 12.29 |
| KRH46935 | Soybean | nucleus | 18.46 | 11.01 |
| KRH01744 | Soybean | nucleus | 17.95 | 10.09 |
| Bra012098.1-P | Field mustard | cytosol | 0.51 | 0.56 |
| CDY53849 | Canola | nucleus, plastid | 0.51 | 0.49 |
Protein Annotations
| EMBL:ACUP02000738 | EnsemblPlants:KRH69931 | EnsemblPlantsGene:GLYMA_02G057600 | PANTHER:PTHR13952 | PANTHER:PTHR13952:SF5 | ProteinID:KRH69931 |
| ProteinID:KRH69931.1 | SEG:seg | UniParc:UPI0006EDE024 | UniProt:A0A0R0KZ95 | MapMan:35.2 | : |
Description
hypothetical protein
Coordinates
chr2:-:5176428..5178478
Molecular Weight (calculated)
23355.7 Da
IEP (calculated)
5.932
GRAVY (calculated)
-2.201
Length
195 amino acids
Sequence
(BLAST)
(BLAST)
001: MEADGRKIEG QRGGGLGTTR VGGEEVNQQH FGREQQQSGL SRSEEPRAQE DHHGDRDREK SRERGKDRHR ESEWSCERSS GRARDRDYRG DRHYRDWDRN
101: MDRDRERERD RDVIVVESDR EHDRYRERDR DYEIGVTDRG HSHNRETDCD HVESKHDKEH HGEREHDYEP EDGRGWYNQP GYGHSHADPN HDPDH
101: MDRDRERERD RDVIVVESDR EHDRYRERDR DYEIGVTDRG HSHNRETDCD HVESKHDKEH HGEREHDYEP EDGRGWYNQP GYGHSHADPN HDPDH
001: MGDSGDPFLR NPNAAVQARA KVQNRANVLQ LKLMGQSHPT GLTNNLLKLF EPRPPLEYKP PPEKRKCPPY TGMAQFVSNF AEPGDPEYAP PKPEVELPSQ
101: KRERIHKLRL EKGVEKAAED LKKYDPNNDP NATGDPYKTL FVSRLNYESS ESKIKREFES YGPIKRVHLV TDQLTNKPKG YAFIEYMHTR DMKAAYKQAD
201: GQKIDGRRVL VDVERGRTVP NWRPRRLGGG LGTSRVGGGE EIVGEQQPQG RTSQSEEPSR PREEREKSRE KGKERERSRE LSHEQPRERS RDRPREDKHH
301: RDRDQGGRDR DRDSRRDRDR TRDRGDRDRR DRDRGRDRTS RDHDRDRSRK KERDYEGGEY EHEGGGRSRE RDAEYRGEPE ETRGYYEDDQ GDTDRYSHRY
401: DKMEEDDFRY EREYKRSKRS ESREYVR
101: KRERIHKLRL EKGVEKAAED LKKYDPNNDP NATGDPYKTL FVSRLNYESS ESKIKREFES YGPIKRVHLV TDQLTNKPKG YAFIEYMHTR DMKAAYKQAD
201: GQKIDGRRVL VDVERGRTVP NWRPRRLGGG LGTSRVGGGE EIVGEQQPQG RTSQSEEPSR PREEREKSRE KGKERERSRE LSHEQPRERS RDRPREDKHH
301: RDRDQGGRDR DRDSRRDRDR TRDRGDRDRR DRDRGRDRTS RDHDRDRSRK KERDYEGGEY EHEGGGRSRE RDAEYRGEPE ETRGYYEDDQ GDTDRYSHRY
401: DKMEEDDFRY EREYKRSKRS ESREYVR
Arabidopsis Description
RNU1U1SNRNP [Source:UniProtKB/TrEMBL;Acc:A0A178VDW4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.