Factsheet for GSMUA_Achr7P00820_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr1P09660_001
GSMUA_Achr4P09230_001
GSMUA_Achr6P15450_001
GSMUA_Achr8P10150_001
GSMUA_Achr8P24800_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G50670.1	GSMUA_Achr11P...	AT1G02840.1	18674533
AT3G50670.1	GSMUA_Achr8P10150_001	AT1G02840.1	18674533
AT3G50670.1	GSMUA_Achr11P...	AT1G09140.1	21798944
AT3G50670.1	GSMUA_Achr8P10150_001	AT1G09140.1	21798944
AT3G50670.1	GSMUA_Achr1P09660_001	AT1G23860.1	10593939
AT3G50670.1	GSMUA_AchrUn_...	AT1G23860.1	10593939
AT3G50670.1	GSMUA_Achr1P09660_001	AT1G23860.1	9761791
AT3G50670.1	GSMUA_AchrUn_...	AT1G23860.1	9761791
AT3G50670.1	GSMUA_Achr10P...	AT2G37340.1	18674533
AT3G50670.1	GSMUA_Achr6P15450_001	AT2G37340.1	18674533
AT3G50670.1	GSMUA_Achr4P09230_001	AT4G31580.1	10593939
AT3G50670.1	GSMUA_Achr8P24800_001	AT4G31580.1	10593939
AT3G50670.1	GSMUA_Achr4P09230_001	AT4G31580.1	9761791
AT3G50670.1	GSMUA_Achr8P24800_001	AT4G31580.1	9761791

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH69931	Soybean	cytosol, mitochondrion, nucleus	43.3	21.54
GSMUA_Achr10P...	Banana	nucleus	68.04	16.92
VIT_04s0023g01580.t01	Wine grape	nucleus	61.86	16.85
GSMUA_Achr7P08090_001	Banana	nucleus	63.92	14.98
TraesCS1B01G146600.1	Wheat	nucleus	52.58	14.25
KRH76798	Soybean	nucleus	63.92	12.89
KRH28659	Soybean	nucleus	63.92	12.86
HORVU1Hr1G046870.5	Barley	nucleus	58.76	11.85
TraesCS1D01G162500.1	Wheat	nucleus	58.76	11.85
TraesCS1B01G203600.1	Wheat	nucleus	58.76	11.85
TraesCS1A01G176500.1	Wheat	nucleus	58.76	11.85
Os10t0115600-02	Rice	nucleus	54.64	11.45
GSMUA_Achr8P09080_001	Banana	nucleus	31.96	11.23
EER95096	Sorghum	nucleus	54.64	10.95
CDX81371	Canola	nucleus	47.42	10.93
PGSC0003DMT400038558	Potato	nucleus	52.58	10.74
CDY57127	Canola	plasma membrane	46.39	10.66
CDY30756	Canola	nucleus, plastid	45.36	10.6
AT3G50670.1	Thale cress	nucleus	46.39	10.54
EER91800	Sorghum	nucleus	52.58	10.49
Solyc02g085420.2.1	Tomato	nucleus	51.55	10.46
TraesCS1D01G124800.1	Wheat	nucleus	51.55	10.44
TraesCS1A01G128600.1	Wheat	nucleus	50.52	10.19
HORVU1Hr1G030660.5	Barley	nucleus	51.55	10.04
Zm00001d014343_P002	Maize	nucleus	54.64	9.43
Bra012098.1-P	Field mustard	cytosol	5.15	2.81
CDY53849	Canola	nucleus, plastid	2.06	0.98

Protein Annotations

EnsemblPlants:GSMUA_Achr7P00820_001	EnsemblPlants:GSMUA_Achr7T00820_001	EnsemblPlantsGene:GSMUA_Achr7G00820_001	Gene3D:3.30.70.330	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf
PANTHER:PTHR13952	PANTHER:PTHR13952:SF5	SEG:seg	UniParc:UPI000295D756	UniProt:M0TDM2	MapMan:35.2

Description

Putative U1 snRNP 70K protein [Source:GMGC_GENE;Acc:GSMUA_Achr7G00820_001]

Coordinates

chr7:-:666654..670801

Molecular Weight (calculated)

11014.9 Da

IEP (calculated)

10.314

GRAVY (calculated)

-1.155

Length

97 amino acids

Sequence
(BLAST)

1: MKTAYKQADG RKIDNKRVLV DVEQGRSVPN WRPQRLGGGL GTTRTGGEEV NQKHSGREQQ KCASGHSRSE ESRAQDDRQV DRYDGLFTFH FLVKVQV

Best Arabidopsis Sequence Match ( AT3G50670.1 )
(BLAST)

001: MGDSGDPFLR NPNAAVQARA KVQNRANVLQ LKLMGQSHPT GLTNNLLKLF EPRPPLEYKP PPEKRKCPPY TGMAQFVSNF AEPGDPEYAP PKPEVELPSQ
101: KRERIHKLRL EKGVEKAAED LKKYDPNNDP NATGDPYKTL FVSRLNYESS ESKIKREFES YGPIKRVHLV TDQLTNKPKG YAFIEYMHTR DMKAAYKQAD
201: GQKIDGRRVL VDVERGRTVP NWRPRRLGGG LGTSRVGGGE EIVGEQQPQG RTSQSEEPSR PREEREKSRE KGKERERSRE LSHEQPRERS RDRPREDKHH
301: RDRDQGGRDR DRDSRRDRDR TRDRGDRDRR DRDRGRDRTS RDHDRDRSRK KERDYEGGEY EHEGGGRSRE RDAEYRGEPE ETRGYYEDDQ GDTDRYSHRY
401: DKMEEDDFRY EREYKRSKRS ESREYVR

Arabidopsis Description

RNU1U1SNRNP [Source:UniProtKB/TrEMBL;Acc:A0A178VDW4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.