Factsheet for HORVU1Hr1G030660.5

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
mitochondrion 2
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
TargetP:	mitochondrion
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G009950.7
HORVU1Hr1G024060.21
HORVU2Hr1G019410.4
HORVU3Hr1G064550.7
HORVU4Hr1G046940.7
HORVU6Hr1G083840.4
HORVU7Hr1G031320.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G50670.1	HORVU2Hr1G019410.4	AT1G02840.1	18674533
AT3G50670.1	HORVU3Hr1G064550.7	AT1G02840.1	18674533
AT3G50670.1	HORVU4Hr1G046940.7	AT1G02840.1	18674533
AT3G50670.1	HORVU2Hr1G019410.4	AT1G09140.1	21798944
AT3G50670.1	HORVU3Hr1G064550.7	AT1G09140.1	21798944
AT3G50670.1	HORVU4Hr1G046940.7	AT1G09140.1	21798944
AT3G50670.1	HORVU1Hr1G009950.7	AT2G37340.1	18674533
AT3G50670.1	HORVU1Hr1G024060.21	AT2G37340.1	18674533
AT3G50670.1	HORVU6Hr1G083840.4	AT4G31580.1	10593939
AT3G50670.1	HORVU7Hr1G031320.1	AT4G31580.1	10593939
AT3G50670.1	HORVU6Hr1G083840.4	AT4G31580.1	9761791
AT3G50670.1	HORVU7Hr1G031320.1	AT4G31580.1	9761791

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G124800.1	Wheat	nucleus	90.96	94.57
TraesCS1A01G128600.1	Wheat	nucleus	90.36	93.56
TraesCS1B01G146600.1	Wheat	nucleus	63.65	88.55
Os10t0115600-02	Rice	nucleus	73.9	79.48
EER95096	Sorghum	nucleus	70.68	72.73
HORVU1Hr1G046870.5	Barley	nucleus	66.27	68.61
EER91800	Sorghum	nucleus	66.67	68.31
VIT_04s0023g01580.t01	Wine grape	nucleus	45.78	64.04
GSMUA_Achr10P...	Banana	nucleus	49.4	63.08
Zm00001d014343_P002	Maize	nucleus	70.08	62.1
GSMUA_Achr7P08090_001	Banana	nucleus	50.8	61.11
Bra012098.1-P	Field mustard	cytosol	20.68	57.87
CDY53849	Canola	nucleus, plastid	23.29	56.86
CDX81371	Canola	nucleus	44.58	52.73
AT3G50670.1	Thale cress	nucleus	44.98	52.46
CDY57127	Canola	plasma membrane	44.38	52.37
PGSC0003DMT400038558	Potato	nucleus	49.6	52.0
Solyc02g085420.2.1	Tomato	nucleus	49.8	51.88
KRH76798	Soybean	nucleus	50.0	51.77
KRH28659	Soybean	nucleus	50.0	51.66
GSMUA_Achr7P00820_001	Banana	cytosol	10.04	51.55
CDY30756	Canola	nucleus, plastid	29.32	35.18
KRH69931	Soybean	cytosol, mitochondrion, nucleus	13.45	34.36
HORVU5Hr1G078170.27	Barley	nucleus	18.27	19.7

Protein Annotations

MapMan:16.4.1.1.1	Gene3D:3.30.70.330	UniProt:A0A287F1U7	EMBL:AK359715	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0030619	EnsemblPlantsGene:HORVU1Hr1G030660	EnsemblPlants:HORVU1Hr1G030660.5	InterPro:IPR000504
InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF12220	PFscan:PS50102	PANTHER:PTHR13952
PANTHER:PTHR13952:SF5	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	InterPro:U1snRNP70_N
UniParc:UPI000B474003	SEG:seg	InterPro:snRNP70_RRM	:	:	:

Description

No Description!

Coordinates

chrchr1H:-:178500049..178505600

Molecular Weight (calculated)

57821.6 Da

IEP (calculated)

9.798

GRAVY (calculated)

-1.672

Length

498 amino acids

Sequence
(BLAST)

001: PPPVSQTRAR IASRKPLAAA AGSVAMGDHG NAMTRGNPDG GLQGRPKGVP RANVQQLKLM GQGHPTGLTP NLLKLFEARP MLEHKPPVQK RKLPAYTGMA
101: QFVSRFAEPG DPEYAPPVPT CETKAEKKDR IRKLKLEQGA DKVAKELQNY NPQSDPNTTS DPYKTLFVAR LNYETSESRV KREFEAYGPI KRVRLVTDKD
201: TNKPRGYAFI EYMHTRDMKN AYKQADGRKV DNKRVLVDVE RGRTVPNWRP RRLGGGLGSS RICGASADQK PPAREAPSVG RPRSEEPKRG DSRVDRDREK
301: SRERVRERDL DENPRERDSR EERHHHRDRD RTRDRDRGRD REKDHGRDRD RDRRDRDRDR DRGRDHDREK DRGLSHDRHR ERGRDRERDD GRASYERDRG
401: HLKDRDAEYN CEPKHDRSMA DYGKHYGSNQ HEQHKSYESY RYQDGHGHGH ETESSKRHEH EYYQAQPNTE PEGPEEGEAY EEGDYQYHQA AEEQKTEA

Best Arabidopsis Sequence Match ( AT3G50670.1 )
(BLAST)

001: MGDSGDPFLR NPNAAVQARA KVQNRANVLQ LKLMGQSHPT GLTNNLLKLF EPRPPLEYKP PPEKRKCPPY TGMAQFVSNF AEPGDPEYAP PKPEVELPSQ
101: KRERIHKLRL EKGVEKAAED LKKYDPNNDP NATGDPYKTL FVSRLNYESS ESKIKREFES YGPIKRVHLV TDQLTNKPKG YAFIEYMHTR DMKAAYKQAD
201: GQKIDGRRVL VDVERGRTVP NWRPRRLGGG LGTSRVGGGE EIVGEQQPQG RTSQSEEPSR PREEREKSRE KGKERERSRE LSHEQPRERS RDRPREDKHH
301: RDRDQGGRDR DRDSRRDRDR TRDRGDRDRR DRDRGRDRTS RDHDRDRSRK KERDYEGGEY EHEGGGRSRE RDAEYRGEPE ETRGYYEDDQ GDTDRYSHRY
401: DKMEEDDFRY EREYKRSKRS ESREYVR

Arabidopsis Description

RNU1U1SNRNP [Source:UniProtKB/TrEMBL;Acc:A0A178VDW4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.