CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

plasma membrane: 26746009

msms PMID: 26746009 doi

S Chen, Y Luo, G Ding, F Xu

National Key Laboratory of Crop Genetic Improvement, and Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China., National Key Laboratory of Crop Genetic Improvement, and Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China. Electronic address: fangsenxu@mail.hzau.edu.cn., National Key Laboratory of Crop Genetic Improvement, and Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China; Key Laboratory of Agricultural Biotechnology of Liaoning Province, College of Biological Science and Technology, Shenyang Agricultural University, Shenyang 110866, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX72313
CDX79732
CDX95008
CDY13444
CDY46773
CDY47646
CDY59084
CDY66028

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G50670.1	CDX95008	AT1G09140.1	21798944
AT3G50670.1	CDY66028	AT1G09140.1	21798944
AT3G50670.1	CDY47646	AT1G23860.1	10593939
AT3G50670.1	CDY59084	AT1G23860.1	10593939
AT3G50670.1	CDY47646	AT1G23860.1	9761791
AT3G50670.1	CDY59084	AT1G23860.1	9761791
AT3G50670.1	CDX79732	AT2G37340.1	18674533
AT3G50670.1	CDY46773	AT2G37340.1	18674533
AT3G50670.1	CDX72313	AT4G31580.1	10593939
AT3G50670.1	CDY13444	AT4G31580.1	10593939
AT3G50670.1	CDX72313	AT4G31580.1	9761791
AT3G50670.1	CDY13444	AT4G31580.1	9761791

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX81371	Canola	nucleus	93.13	93.35
CDY53849	Canola	nucleus, plastid	37.2	76.96
VIT_04s0023g01580.t01	Wine grape	nucleus	59.0	69.94
AT3G50670.1	Thale cress	nucleus	70.62	69.79
GSMUA_Achr10P...	Banana	nucleus	56.87	61.54
TraesCS1B01G146600.1	Wheat	nucleus	51.66	60.89
GSMUA_Achr7P08090_001	Banana	nucleus	55.69	56.76
KRH28659	Soybean	nucleus	64.22	56.22
KRH76798	Soybean	nucleus	63.74	55.93
PGSC0003DMT400038558	Potato	nucleus	60.9	54.11
Solyc02g085420.2.1	Tomato	nucleus	60.66	53.56
CDY30756	Canola	nucleus, plastid	52.13	53.01
Os10t0115600-02	Rice	nucleus	55.92	50.97
HORVU1Hr1G046870.5	Barley	nucleus	55.69	48.86
TraesCS1A01G176500.1	Wheat	nucleus	55.45	48.65
TraesCS1D01G162500.1	Wheat	nucleus	55.21	48.44
TraesCS1B01G203600.1	Wheat	nucleus	54.74	48.02
TraesCS1D01G124800.1	Wheat	nucleus	54.03	47.6
EER95096	Sorghum	nucleus	54.03	47.11
TraesCS1A01G128600.1	Wheat	nucleus	53.55	46.99
EER91800	Sorghum	nucleus	54.03	46.91
GSMUA_Achr7P00820_001	Banana	cytosol	10.66	46.39
HORVU1Hr1G030660.5	Barley	nucleus	52.37	44.38
Zm00001d014343_P002	Maize	nucleus	54.5	40.93
KRH69931	Soybean	cytosol, mitochondrion, nucleus	15.64	33.85
CDY14697	Canola	cytosol, mitochondrion	11.37	26.52
CDY44222	Canola	nucleus	19.67	26.02
CDY23361	Canola	endoplasmic reticulum	15.64	25.88
CDX83484	Canola	nucleus	19.67	25.78
CDY22251	Canola	cytosol	8.77	24.03

Protein Annotations

MapMan:16.4.1.1.1	Gene3D:3.30.70.330	GO:A0A078J441	UniProt:A0A078J441	EnsemblPlants:CDY57127	ProteinID:CDY57127
ProteinID:CDY57127.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0030619
EnsemblPlantsGene:GSBRNA2T00020571001	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF12220
PFscan:PS50102	PANTHER:PTHR13952	PANTHER:PTHR13952:SF5	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360
SUPFAM:SSF54928	InterPro:U1snRNP70_N	UniParc:UPI0004EF075D	SEG:seg	InterPro:snRNP70_RRM	:

Description

BnaA09g52620DBnaA09g52620D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J441]

Coordinates

chrLK033548:-:32672..35929

Molecular Weight (calculated)

49927.4 Da

IEP (calculated)

9.774

GRAVY (calculated)

-1.798

Length

422 amino acids

Sequence
(BLAST)

001: MGDMNDPFMR NQAVQARPKV QNRSNVLQLK LMGQSHPTGL TPNLLKLFEP RPPLEFLPPP EKRKCPPYTG MAQFVSGFAE PGDPEYAPPK PEVETPAQKR
101: ERIHKSRLEK GVEKAAEDLQ KYDPNNDPNA SGDPYKTLFV ARLNYETSES KIKREFEAYG PIKQVHLVTD QQTNKPKGYA FIEYLNTRDM KAAYKQGDGK
201: KIDGRRVLVD VERGRTVPNW RPRRLGGGLG TTRVTGEKIA GEEEQQQPSQ ARTSRSEEPK AREDREKSRD RGKEREREVS HERSRERSHE RSRERSRDRP
301: RESHREDKHH RDRDRGRDRG DRDRESRRDR GDRDRRSRDH DRERSRKRDR DYESGEYEEE GEYERGGSKQ RRGESEEGHG YYEGRRGDQD RYDDRYGRVE
401: EEEYRYDDRE YKRSERSKSR DY

Best Arabidopsis Sequence Match ( AT3G50670.1 )
(BLAST)

001: MGDSGDPFLR NPNAAVQARA KVQNRANVLQ LKLMGQSHPT GLTNNLLKLF EPRPPLEYKP PPEKRKCPPY TGMAQFVSNF AEPGDPEYAP PKPEVELPSQ
101: KRERIHKLRL EKGVEKAAED LKKYDPNNDP NATGDPYKTL FVSRLNYESS ESKIKREFES YGPIKRVHLV TDQLTNKPKG YAFIEYMHTR DMKAAYKQAD
201: GQKIDGRRVL VDVERGRTVP NWRPRRLGGG LGTSRVGGGE EIVGEQQPQG RTSQSEEPSR PREEREKSRE KGKERERSRE LSHEQPRERS RDRPREDKHH
301: RDRDQGGRDR DRDSRRDRDR TRDRGDRDRR DRDRGRDRTS RDHDRDRSRK KERDYEGGEY EHEGGGRSRE RDAEYRGEPE ETRGYYEDDQ GDTDRYSHRY
401: DKMEEDDFRY EREYKRSKRS ESREYVR

Arabidopsis Description

RNU1U1SNRNP [Source:UniProtKB/TrEMBL;Acc:A0A178VDW4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.