Factsheet for Solyc02g085420.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 25464976
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g099810.2.1
Solyc05g054920.2.1
Solyc06g009060.2.1
Solyc08g069120.2.1
Solyc09g005980.2.1
Solyc09g075090.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G50670.1	Solyc06g009060.2.1	AT1G02840.1	18674533
AT3G50670.1	Solyc09g075090.1.1	AT1G02840.1	18674533
AT3G50670.1	Solyc01g099810.2.1	AT1G09140.1	21798944
AT3G50670.1	Solyc05g054920.2.1	AT2G37340.1	18674533
AT3G50670.1	Solyc09g005980.2.1	AT2G37340.1	18674533
AT3G50670.1	Solyc08g069120.2.1	AT4G31580.1	10593939
AT3G50670.1	Solyc08g069120.2.1	AT4G31580.1	9761791

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400038558	Potato	nucleus	88.28	88.84
VIT_04s0023g01580.t01	Wine grape	nucleus	53.14	71.35
GSMUA_Achr10P...	Banana	nucleus	55.44	67.95
Bra012098.1-P	Field mustard	cytosol	24.48	65.73
TraesCS1B01G146600.1	Wheat	nucleus	48.12	64.25
GSMUA_Achr7P08090_001	Banana	nucleus	55.44	64.01
CDY53849	Canola	nucleus, plastid	26.99	63.24
KRH76798	Soybean	nucleus	62.13	61.75
KRH28659	Soybean	nucleus	61.92	61.41
AT3G50670.1	Thale cress	nucleus	54.81	61.36
CDX81371	Canola	nucleus	53.97	61.28
CDY57127	Canola	plasma membrane	53.56	60.66
Os10t0115600-02	Rice	nucleus	53.97	55.72
HORVU1Hr1G046870.5	Barley	nucleus	55.23	54.89
TraesCS1A01G176500.1	Wheat	nucleus	54.81	54.47
TraesCS1D01G162500.1	Wheat	nucleus	54.6	54.26
TraesCS1B01G203600.1	Wheat	nucleus	54.39	54.05
EER95096	Sorghum	nucleus	54.39	53.72
EER91800	Sorghum	nucleus	54.39	53.5
TraesCS1D01G124800.1	Wheat	nucleus	53.56	53.44
TraesCS1A01G128600.1	Wheat	nucleus	53.35	53.01
GSMUA_Achr7P00820_001	Banana	cytosol	10.46	51.55
HORVU1Hr1G030660.5	Barley	nucleus	51.88	49.8
Zm00001d014343_P002	Maize	nucleus	55.44	47.15
KRH69931	Soybean	cytosol, mitochondrion, nucleus	17.99	44.1
CDY30756	Canola	nucleus, plastid	37.45	43.13
Solyc09g098390.2.1	Tomato	nucleus	19.46	26.2

Protein Annotations

MapMan:16.4.1.1.1	Gene3D:3.30.70.330	GO:GO:0000243	GO:GO:0000398	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005685	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0030619	GO:GO:0071004	GO:GO:0071011	InterPro:IPR000504	InterPro:IPR012677	UniProt:K4BB54
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF12220	PFscan:PS50102	PANTHER:PTHR13952	PANTHER:PTHR13952:SF5
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	EnsemblPlantsGene:Solyc02g085420.2	EnsemblPlants:Solyc02g085420.2.1
InterPro:U1snRNP70_N	UniParc:UPI0002769222	SEG:seg	InterPro:snRNP70_RRM	:	:

Description

No Description!

Coordinates

chr2:-:48326837..48332821

Molecular Weight (calculated)

56913.0 Da

IEP (calculated)

9.190

GRAVY (calculated)

-1.833

Length

478 amino acids

Sequence
(BLAST)

001: MGDFNDAFMR NNPNVQARAK AQNRANVMQL KLIGQSHPTG LTANLLKLFE PRPPLEYKPP PEKRKCPSYT GMAQFVSNFA QPGDPEYAPP IPEVETPLLL
101: ERRARIHKIR LEEGAKKAAE ELEKYDPSSD PNATGDPYKT LFVARLNYET TESRVKREFE AYGPIKRVRL VMDKTNNKPR GYAFIEYVHT RDMKAAYKQA
201: DGKKIDNRRV LVDVERGRTV PNWRPRRLGG GLGTTRVGNE DATREVVQPG RAASRSEEPR ARDDRDRDRE KSRERVRDKD REKSRERSHD RPRERERDDK
301: HHRERERTRE REKDRGRDRD RDRERDRTRD RERGKDRDRD GHRERDRHRE KDRERGRDEG EVDQGRGRSR DREYDYEHVD SKHERDRHGD KERNYDPAEP
401: EDDHGHYDYY DHHQGRGDYE NPDAQGGDDR YKDASRGHDR YDQMEEDNYA YDHGASETKE RDRDYKRSDR SHSREYDY

Best Arabidopsis Sequence Match ( AT3G50670.1 )
(BLAST)

001: MGDSGDPFLR NPNAAVQARA KVQNRANVLQ LKLMGQSHPT GLTNNLLKLF EPRPPLEYKP PPEKRKCPPY TGMAQFVSNF AEPGDPEYAP PKPEVELPSQ
101: KRERIHKLRL EKGVEKAAED LKKYDPNNDP NATGDPYKTL FVSRLNYESS ESKIKREFES YGPIKRVHLV TDQLTNKPKG YAFIEYMHTR DMKAAYKQAD
201: GQKIDGRRVL VDVERGRTVP NWRPRRLGGG LGTSRVGGGE EIVGEQQPQG RTSQSEEPSR PREEREKSRE KGKERERSRE LSHEQPRERS RDRPREDKHH
301: RDRDQGGRDR DRDSRRDRDR TRDRGDRDRR DRDRGRDRTS RDHDRDRSRK KERDYEGGEY EHEGGGRSRE RDAEYRGEPE ETRGYYEDDQ GDTDRYSHRY
401: DKMEEDDFRY EREYKRSKRS ESREYVR

Arabidopsis Description

RNU1U1SNRNP [Source:UniProtKB/TrEMBL;Acc:A0A178VDW4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.