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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • plastid 3
  • nucleus 3
  • mitochondrion 5
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus, plastid
BaCelLo:plastid
ChloroP:plastid
EpiLoc:nucleus
iPSORT:mitochondrion
MultiLoc:nucleus
Plant-mPloc:nucleus
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:plastid
YLoc:mitochondrion
 nucleus: 25464976
nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 25464976 doi
Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc01g005820.2.1
Solyc01g080660.2.1
Solyc01g105140.2.1
Solyc02g085420.2.1
Solyc04g056280.2.1
Solyc05g054920.2.1
Solyc07g066420.2.1
Solyc09g005980.2.1
Solyc09g098390.2.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G02840.1 Solyc07g066420.2.1 AT1G53720.1 16497658
AT1G02840.1 Solyc05g054920.2.1 AT2G37340.1 18674533
AT1G02840.1 Solyc09g005980.2.1 AT2G37340.1 18674533
AT1G02840.1 Solyc09g098390.2.1 AT2G43370.1 15987817
AT1G02840.1 Solyc01g005820.2.1 AT3G13570.1 18674533
AT1G02840.1 Solyc02g085420.2.1 AT3G50670.1 18674533
AT1G02840.1 Solyc01g080660.2.1 AT5G18810.1 18674533
AT1G02840.1 Solyc01g105140.2.1 AT5G64200.2 18674533
AT1G02840.1 Solyc04g056280.2.1 AT5G64960.1 18208522
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400029666 Potato nucleus 82.95 80.32
VIT_07s0005g00320.t01 Wine grape nucleus 70.16 69.48
Solyc01g099810.2.1 Tomato nucleus 57.7 66.67
EER94870 Sorghum mitochondrion, nucleus 61.64 65.73
KRH68188 Soybean nucleus 64.26 65.55
Bra018550.1-P Field mustard nucleus 55.41 64.75
Os03t0344100-02 Rice mitochondrion, nucleus 60.66 64.69
Zm00001d047498_P003 Maize nucleus 60.0 64.21
Os07t0673500-01 Rice nucleus 62.3 64.19
KXG32406 Sorghum cytosol 54.43 64.09
AT4G02430.4 Thale cress nucleus 61.31 64.04
HORVU2Hr1G019410.4 Barley mitochondrion, nucleus 60.0 63.99
TraesCS2D01G112200.1 Wheat nucleus 59.02 63.38
TraesCS2A01G111600.2 Wheat mitochondrion, nucleus 59.02 63.38
KXG21829 Sorghum nucleus 57.05 62.59
TraesCS4D01G168700.1 Wheat mitochondrion, nucleus 60.0 62.46
TraesCS3B01G293100.1 Wheat cytosol 52.13 62.35
TraesCS3D01G260200.1 Wheat cytosol 51.8 61.96
TraesCS4B01G157000.1 Wheat mitochondrion, nucleus 59.34 61.77
HORVU4Hr1G046940.7 Barley mitochondrion, nucleus 59.67 61.69
KRG96443 Soybean nucleus 63.28 61.66
TraesCS1A01G229900.1 Wheat cytosol, mitochondrion, nucleus 51.15 61.66
TraesCS3A01G260000.1 Wheat cytosol 51.48 61.57
CDY50385 Canola nucleus 61.64 61.04
TraesCS1B01G244200.1 Wheat cytosol, mitochondrion, nucleus 53.77 60.97
CDY22050 Canola nucleus 61.64 60.84
TraesCS4A01G157700.1 Wheat mitochondrion 59.02 60.81
TraesCS1D01G232100.2 Wheat cytosol, mitochondrion, nucleus 50.49 60.63
AT1G02840.1 Thale cress nucleus 60.0 60.4
CDX97264 Canola nucleus 60.33 60.33
GSMUA_Achr8P10150_001 Banana nucleus 69.18 60.29
Bra036267.1-P Field mustard nucleus 61.31 59.94
CDX91319 Canola nucleus 58.36 59.53
Zm00001d040672_P013 Maize nucleus 55.41 57.68
Os05t0364600-01 Rice nucleus 59.34 56.74
Solyc03g082380.2.1 Tomato nucleus 51.8 56.43
Zm00001d041673_P001 Maize cytosol 20.98 56.14
GSMUA_Achr11P... Banana nucleus 62.95 55.49
TraesCS2B01G130400.1 Wheat nucleus 60.33 53.18
Solyc06g009060.2.1 Tomato nucleus 41.97 48.85
Zm00001d037925_P006 Maize cytosol, nucleus, plastid 55.41 48.84
HORVU3Hr1G064550.7 Barley nucleus, peroxisome 52.13 47.32
Os01t0316600-01 Rice plastid 13.11 32.26
Zm00001d009821_P001 Maize plastid 27.87 26.73
Solyc05g054920.2.1 Tomato nucleus 28.52 25.82
Solyc09g005980.2.1 Tomato nucleus 26.56 25.71
Protein Annotations
EnsemblPlants:Solyc09g075090.1.1EnsemblPlantsGene:Solyc09g075090.1Gene3D:3.30.70.330GO:GO:0003674GO:GO:0003676GO:GO:0003723
GO:GO:0005488InterPro:IPR000504InterPro:IPR012677InterPro:Nucleotide-bd_a/b_plait_sfInterPro:RBD_domain_sfInterPro:RRM_dom
PANTHER:PTHR43933PANTHER:PTHR43933:SF7PFAM:PF00076PFscan:PS50102SEG:segSMART:SM00360
SUPFAM:SSF54928UniParc:UPI000276B95DUniProt:K4CV86MapMan:16.4.6.1::
Description
No Description!
Coordinates
chr9:-:66897898..66903025
Molecular Weight (calculated)
34335.3 Da
IEP (calculated)
11.182
GRAVY (calculated)
-0.850
Length
305 amino acids
Sequence
(BLAST)
001: MRNMLFASLY PARLHFLKTL IFKISSSSTL SALDLPSRSS RTLYVGNLPG DVREREVEDL FYKYGPIAHI ELKIPPRPPG YAFVEFEEAR DAEDAIRGRD
101: GYDFDGHRLR VELAHGGRGN SSSNDRYGGG GGGRGQRGGG VSRRSDYRVL VTGLPHSASW QDLKDHMRRA GDVCFSQVFR DGSGTTGIID YTNYDDMKYA
201: IKKLDDSEFR NAFSRATIRV KEYDRSRSRS RSRSRSYSRG KSVSRSRSRS RSRSRSKSKS KSPKVKSSKR SRSRSRSVSS QSRSGSKGRP VSRFWICAAV
301: CGFAY
Best Arabidopsis Sequence Match ( AT1G02840.2 )
(BLAST)
001: MSSRSSRTVY VGNLPGDIRE REVEDLFSKY GPVVQIDLKV PPRPPGYAFV EFDDARDAED AIHGRDGYDF DGHRLRVELA HGGRRSSDDT RGSFNGGGRG
101: GGRGRGDGGS RGPSRRSEFR VLVTGLPSSA SWQDLKDHMR KGGDVCFSQV YRDARGTTGV VDYTCYEDMK YALKKLDDTE FRNAFSNGYV RVREYDSRKD
201: SRSPSRGRSY SKSRSRSRGR SVSRSRSRSR SRSRSPKAKS SRRSPAKSTS RSPGPRSKSR SPSPRRWITV ETLDHLDHNI ISGFL
Arabidopsis Description
SR34Serine/arginine-rich-splicing factor SR34 [Source:UniProtKB/Swiss-Prot;Acc:O22315]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.