Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G232100.2 | Wheat | cytosol, mitochondrion, nucleus | 98.42 | 98.03 |
| TraesCS1B01G244200.1 | Wheat | cytosol, mitochondrion, nucleus | 95.65 | 89.96 |
| KXG21829 | Sorghum | nucleus | 80.63 | 73.38 |
| TraesCS3A01G260000.1 | Wheat | cytosol | 73.52 | 72.94 |
| Bra018581.1-P | Field mustard | cytosol | 63.64 | 69.4 |
| Os05t0364600-01 | Rice | nucleus | 83.79 | 66.46 |
| CDY66028 | Canola | cytosol | 66.01 | 66.01 |
| AT1G09140.1 | Thale cress | cytosol | 66.4 | 62.69 |
| Solyc01g099810.2.1 | Tomato | nucleus | 64.43 | 61.74 |
| VIT_14s0060g02290.t01 | Wine grape | nucleus | 69.96 | 61.46 |
| TraesCS4A01G157700.1 | Wheat | mitochondrion | 69.57 | 59.46 |
| TraesCS2A01G111600.2 | Wheat | mitochondrion, nucleus | 66.4 | 59.15 |
| KRG92904 | Soybean | nucleus | 64.43 | 59.06 |
| CDX91319 | Canola | nucleus | 68.77 | 58.19 |
| CDY22050 | Canola | nucleus | 69.17 | 56.63 |
| CDY50385 | Canola | nucleus | 68.77 | 56.49 |
| Bra036267.1-P | Field mustard | nucleus | 69.57 | 56.41 |
| CDX97264 | Canola | nucleus | 67.59 | 56.07 |
| Bra018550.1-P | Field mustard | nucleus | 57.71 | 55.94 |
| KRG96443 | Soybean | nucleus | 67.98 | 54.95 |
| VIT_07s0005g00320.t01 | Wine grape | nucleus | 66.8 | 54.87 |
| AT1G02840.1 | Thale cress | nucleus | 65.61 | 54.79 |
| AT4G02430.4 | Thale cress | nucleus | 62.06 | 53.77 |
| Zm00001d037925_P006 | Maize | cytosol, nucleus, plastid | 73.52 | 53.76 |
| PGSC0003DMT400029666 | Potato | nucleus | 66.4 | 53.33 |
| KRH68188 | Soybean | nucleus | 62.45 | 52.84 |
| CDX95008 | Canola | nucleus | 64.82 | 51.73 |
| PGSC0003DMT400037966 | Potato | cytosol, extracellular, nucleus | 59.29 | 51.37 |
| Solyc09g075090.1.1 | Tomato | nucleus | 61.66 | 51.15 |
| PGSC0003DMT400063701 | Potato | nucleus | 58.5 | 44.85 |
| Solyc06g009060.2.1 | Tomato | nucleus | 38.74 | 37.4 |
| TraesCS1A01G108000.2 | Wheat | nucleus | 30.04 | 27.34 |
| TraesCS1A01G049700.1 | Wheat | nucleus | 36.76 | 27.19 |
| TraesCS3A01G308000.1 | Wheat | nucleus | 33.99 | 25.83 |
Protein Annotations
| EnsemblPlants:TraesCS1A01G229900.1 | EnsemblPlantsGene:TraesCS1A01G229900 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom | PANTHER:PTHR43933 |
| PANTHER:PTHR43933:SF1 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 |
| TIGR:cd12599 | TIGR:cd12602 | MapMan:16.4.6.1 | : | : | : |
Description
No Description!
Coordinates
chr1A:-:402800919..402804707
Molecular Weight (calculated)
29007.7 Da
IEP (calculated)
10.170
GRAVY (calculated)
-0.974
Length
253 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRRNGRTIY VGNLPEDIRE REIEDLFYKY GPIVDIDLKI PPRPPVYAFV EFEDPRDADD AIYGRDGYDF DGYKLRVELA HGGKGPSFDR PNSYTSSGRR
101: GALRRSDYRV IVTGLPSSAS WQDLKDHMRR AGDVCFSDVY PEAGAITGIV EYTNYEDMKH AIRKLDDSEF RNAFSRAYIR VREYNARRSR SYSRSRSRSC
201: SYSRSRSHSY SRSRSPRSSR SLSPAAPARD KSASRSPVRS RSLPRSQSPV KSE
101: GALRRSDYRV IVTGLPSSAS WQDLKDHMRR AGDVCFSDVY PEAGAITGIV EYTNYEDMKH AIRKLDDSEF RNAFSRAYIR VREYNARRSR SYSRSRSRSC
201: SYSRSRSHSY SRSRSPRSSR SLSPAAPARD KSASRSPVRS RSLPRSQSPV KSE
001: MSSRWNRTIY VGNLPGDIRK CEVEDLFYKY GPIVDIDLKI PPRPPGYAFV EFEDPRDADD AIYGRDGYDF DGCRLRVEIA HGGRRFSPSV DRYSSSYSAS
101: RAPSRRSDYR VLVTGLPPSA SWQDLKDHMR KAGDVCFSEV FPDRKGMSGV VDYSNYDDMK YAIRKLDATE FRNAFSSAYI RVREYESRSV SRSPDDSKSY
201: RSRSRSRGPS CSYSSKSRSV SPARSISPRS RPLSRSRSLY SSVSRSQSRS KSRSRSRSNS PVSPVISG
101: RAPSRRSDYR VLVTGLPPSA SWQDLKDHMR KAGDVCFSEV FPDRKGMSGV VDYSNYDDMK YAIRKLDATE FRNAFSSAYI RVREYESRSV SRSPDDSKSY
201: RSRSRSRGPS CSYSSKSRSV SPARSISPRS RPLSRSRSLY SSVSRSQSRS KSRSRSRSNS PVSPVISG
Arabidopsis Description
SR30Serine/arginine-rich splicing factor SR30 [Source:UniProtKB/Swiss-Prot;Acc:Q9XFR5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.