Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra018581.1-P | Field mustard | cytosol | 79.1 | 91.38 |
| CDY66028 | Canola | cytosol | 82.84 | 87.75 |
| TraesCS3B01G293100.1 | Wheat | cytosol | 64.93 | 68.24 |
| TraesCS3A01G260000.1 | Wheat | cytosol | 64.55 | 67.84 |
| TraesCS3D01G260200.1 | Wheat | cytosol | 64.55 | 67.84 |
| KXG32406 | Sorghum | cytosol | 65.3 | 67.57 |
| TraesCS1D01G232100.2 | Wheat | cytosol, mitochondrion, nucleus | 63.06 | 66.54 |
| TraesCS1A01G229900.1 | Wheat | cytosol, mitochondrion, nucleus | 62.69 | 66.4 |
| VIT_14s0060g02290.t01 | Wine grape | nucleus | 69.4 | 64.58 |
| CDX95008 | Canola | nucleus | 75.75 | 64.04 |
| Solyc01g099810.2.1 | Tomato | nucleus | 63.06 | 64.02 |
| TraesCS1B01G244200.1 | Wheat | cytosol, mitochondrion, nucleus | 63.43 | 63.2 |
| KRG92904 | Soybean | nucleus | 64.93 | 63.04 |
| Zm00001d040672_P013 | Maize | nucleus | 65.3 | 59.73 |
| KXG21829 | Sorghum | nucleus | 61.94 | 59.71 |
| Zm00001d041673_P001 | Maize | cytosol | 25.37 | 59.65 |
| Zm00001d047498_P003 | Maize | nucleus | 63.06 | 59.3 |
| EER94870 | Sorghum | mitochondrion, nucleus | 63.06 | 59.09 |
| HORVU2Hr1G019410.4 | Barley | mitochondrion, nucleus | 62.69 | 58.74 |
| Os03t0344100-02 | Rice | mitochondrion, nucleus | 62.69 | 58.74 |
| TraesCS2A01G111600.2 | Wheat | mitochondrion, nucleus | 61.94 | 58.45 |
| TraesCS2D01G112200.1 | Wheat | nucleus | 61.57 | 58.1 |
| TraesCS4D01G168700.1 | Wheat | mitochondrion, nucleus | 62.69 | 57.34 |
| Os07t0673500-01 | Rice | nucleus | 63.06 | 57.09 |
| TraesCS4B01G157000.1 | Wheat | mitochondrion, nucleus | 62.31 | 57.0 |
| HORVU4Hr1G046940.7 | Barley | mitochondrion, nucleus | 62.31 | 56.61 |
| AT1G02840.1 | Thale cress | nucleus | 63.81 | 56.44 |
| TraesCS4A01G157700.1 | Wheat | mitochondrion | 62.31 | 56.42 |
| AT4G02430.4 | Thale cress | nucleus | 60.82 | 55.82 |
| Os05t0364600-01 | Rice | nucleus | 66.04 | 55.49 |
| AT3G49430.4 | Thale cress | nucleus | 61.57 | 55.0 |
| GSMUA_Achr11P... | Banana | nucleus | 67.91 | 52.6 |
| HORVU3Hr1G064550.7 | Barley | nucleus, peroxisome | 64.93 | 51.79 |
| GSMUA_Achr8P10150_001 | Banana | nucleus | 67.54 | 51.71 |
| TraesCS2B01G130400.1 | Wheat | nucleus | 61.94 | 47.98 |
| PGSC0003DMT400063701 | Potato | nucleus | 56.72 | 46.06 |
| Zm00001d037925_P006 | Maize | cytosol, nucleus, plastid | 57.46 | 44.51 |
| Os01t0316600-01 | Rice | plastid | 16.04 | 34.68 |
| AT2G37340.1 | Thale cress | nucleus | 32.46 | 30.0 |
| AT3G53500.2 | Thale cress | mitochondrion, nucleus | 30.97 | 29.23 |
| Zm00001d009821_P001 | Maize | plastid | 30.22 | 25.47 |
Protein Annotations
| MapMan:16.4.6.1 | Gene3D:3.30.70.330 | EntrezGene:837433 | EMBL:AC003114 | ProteinID:AEE28400.1 | ProteinID:AEE28401.1 |
| ProteinID:ANM58033.1 | ArrayExpress:AT1G09140 | EnsemblPlantsGene:AT1G09140 | RefSeq:AT1G09140 | TAIR:AT1G09140 | RefSeq:AT1G09140-TAIR-G |
| EnsemblPlants:AT1G09140.1 | TAIR:AT1G09140.1 | Symbol:ATSRP30 | EMBL:AY050912 | EMBL:AY150486 | Unigene:At.419 |
| ProteinID:CAB42557.1 | ProteinID:CAB42558.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005654 | GO:GO:0005681 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006376 | GO:GO:0006397 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008380 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016607 |
| GO:GO:0035061 | GO:GO:0048024 | InterPro:IPR000504 | InterPro:IPR012677 | RefSeq:NP_001320500.1 | RefSeq:NP_172386.3 |
| RefSeq:NP_683288.2 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 |
| PO:PO:0025281 | PFscan:PS50102 | PANTHER:PTHR43933 | PANTHER:PTHR43933:SF7 | UniProt:Q9XFR5 | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI00000AC2AC | SEG:seg | : |
Description
SR30Serine/arginine-rich splicing factor SR30 [Source:UniProtKB/Swiss-Prot;Acc:Q9XFR5]
Coordinates
chr1:-:2942538..2945976
Molecular Weight (calculated)
30387.3 Da
IEP (calculated)
10.216
GRAVY (calculated)
-0.867
Length
268 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSRWNRTIY VGNLPGDIRK CEVEDLFYKY GPIVDIDLKI PPRPPGYAFV EFEDPRDADD AIYGRDGYDF DGCRLRVEIA HGGRRFSPSV DRYSSSYSAS
101: RAPSRRSDYR VLVTGLPPSA SWQDLKDHMR KAGDVCFSEV FPDRKGMSGV VDYSNYDDMK YAIRKLDATE FRNAFSSAYI RVREYESRSV SRSPDDSKSY
201: RSRSRSRGPS CSYSSKSRSV SPARSISPRS RPLSRSRSLY SSVSRSQSRS KSRSRSRSNS PVSPVISG
101: RAPSRRSDYR VLVTGLPPSA SWQDLKDHMR KAGDVCFSEV FPDRKGMSGV VDYSNYDDMK YAIRKLDATE FRNAFSSAYI RVREYESRSV SRSPDDSKSY
201: RSRSRSRGPS CSYSSKSRSV SPARSISPRS RPLSRSRSLY SSVSRSQSRS KSRSRSRSNS PVSPVISG
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.