Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT4G02430.4 | Thale cress | nucleus | 75.25 | 78.08 |
| KRG96443 | Soybean | nucleus | 71.62 | 69.33 |
| KRH68188 | Soybean | nucleus | 67.33 | 68.23 |
| EER94870 | Sorghum | mitochondrion, nucleus | 64.03 | 67.83 |
| TraesCS3B01G293100.1 | Wheat | cytosol | 56.44 | 67.06 |
| TraesCS3D01G260200.1 | Wheat | cytosol | 56.44 | 67.06 |
| Zm00001d047498_P003 | Maize | nucleus | 62.71 | 66.67 |
| KXG32406 | Sorghum | cytosol | 56.77 | 66.41 |
| TraesCS3A01G260000.1 | Wheat | cytosol | 55.78 | 66.27 |
| TraesCS2A01G111600.2 | Wheat | mitochondrion, nucleus | 62.05 | 66.2 |
| TraesCS1D01G232100.2 | Wheat | cytosol, mitochondrion, nucleus | 55.45 | 66.14 |
| Os03t0344100-02 | Rice | mitochondrion, nucleus | 62.38 | 66.08 |
| TraesCS2D01G112200.1 | Wheat | nucleus | 61.72 | 65.85 |
| HORVU2Hr1G019410.4 | Barley | mitochondrion, nucleus | 62.05 | 65.73 |
| TraesCS1A01G229900.1 | Wheat | cytosol, mitochondrion, nucleus | 54.79 | 65.61 |
| PGSC0003DMT400029666 | Potato | nucleus | 67.66 | 65.08 |
| Os07t0673500-01 | Rice | nucleus | 62.38 | 63.85 |
| TraesCS4D01G168700.1 | Wheat | mitochondrion, nucleus | 61.72 | 63.82 |
| AT1G09140.1 | Thale cress | cytosol | 56.44 | 63.81 |
| TraesCS4B01G157000.1 | Wheat | mitochondrion, nucleus | 61.06 | 63.14 |
| HORVU4Hr1G046940.7 | Barley | mitochondrion, nucleus | 61.39 | 63.05 |
| TraesCS4A01G157700.1 | Wheat | mitochondrion | 61.39 | 62.84 |
| KXG21829 | Sorghum | nucleus | 57.43 | 62.59 |
| VIT_07s0005g00320.t01 | Wine grape | nucleus | 63.04 | 62.01 |
| TraesCS1B01G244200.1 | Wheat | cytosol, mitochondrion, nucleus | 54.79 | 61.71 |
| Solyc09g075090.1.1 | Tomato | nucleus | 60.4 | 60.0 |
| PGSC0003DMT400037966 | Potato | cytosol, extracellular, nucleus | 57.76 | 59.93 |
| Zm00001d040672_P013 | Maize | nucleus | 57.76 | 59.73 |
| Os05t0364600-01 | Rice | nucleus | 60.4 | 57.37 |
| AT3G49430.4 | Thale cress | nucleus | 56.44 | 57.0 |
| GSMUA_Achr11P... | Banana | nucleus | 64.36 | 56.36 |
| GSMUA_Achr8P10150_001 | Banana | nucleus | 65.02 | 56.29 |
| Zm00001d041673_P001 | Maize | cytosol | 20.79 | 55.26 |
| TraesCS2B01G130400.1 | Wheat | nucleus | 62.05 | 54.34 |
| HORVU3Hr1G064550.7 | Barley | nucleus, peroxisome | 55.45 | 50.0 |
| Zm00001d037925_P006 | Maize | cytosol, nucleus, plastid | 54.79 | 47.98 |
| Solyc06g009060.2.1 | Tomato | nucleus | 40.26 | 46.56 |
| AT2G37340.1 | Thale cress | nucleus | 32.01 | 33.45 |
| Os01t0316600-01 | Rice | plastid | 13.53 | 33.06 |
| AT3G53500.2 | Thale cress | mitochondrion, nucleus | 29.7 | 31.69 |
| Zm00001d009821_P001 | Maize | plastid | 26.07 | 24.84 |
Protein Annotations
| MapMan:16.4.6.1 | Gene3D:3.30.70.330 | EntrezGene:839262 | ProteinID:AAB71385.1 | ProteinID:AAB71386.1 | ProteinID:AAF02881.1 |
| ProteinID:AEE27477.1 | ProteinID:AEE27478.1 | ProteinID:AEE27479.2 | EMBL:AK118379 | ProteinID:ANM58907.1 | ProteinID:ANM58908.1 |
| ArrayExpress:AT1G02840 | EnsemblPlantsGene:AT1G02840 | RefSeq:AT1G02840 | TAIR:AT1G02840 | RefSeq:AT1G02840-TAIR-G | EnsemblPlants:AT1G02840.1 |
| TAIR:AT1G02840.1 | EMBL:AY085920 | EMBL:AY128338 | Unigene:At.24497 | EMBL:BT006316 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0005681 | GO:GO:0006139 |
| GO:GO:0006397 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008380 | GO:GO:0009987 | GO:GO:0016607 |
| GO:GO:0035061 | InterPro:IPR000504 | InterPro:IPR012677 | EMBL:M98340 | RefSeq:NP_001318908.1 | RefSeq:NP_001321307.1 |
| RefSeq:NP_001321308.1 | RefSeq:NP_850933.1 | RefSeq:NP_850934.1 | InterPro:Nucleotide-bd_a/b_plait_sf | UniProt:O22315 | PFAM:PF00076 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 |
| PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PFscan:PS50102 | PANTHER:PTHR43933 |
| PANTHER:PTHR43933:SF7 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | Symbol:SR1 | SUPFAM:SSF54928 |
| UniParc:UPI0000001405 | SEG:seg | : | : | : | : |
Description
SR34Serine/arginine-rich-splicing factor SR34 [Source:UniProtKB/Swiss-Prot;Acc:O22315]
Coordinates
chr1:+:626639..629993
Molecular Weight (calculated)
33731.1 Da
IEP (calculated)
11.598
GRAVY (calculated)
-1.251
Length
303 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSRSSRTVY VGNLPGDIRE REVEDLFSKY GPVVQIDLKV PPRPPGYAFV EFDDARDAED AIHGRDGYDF DGHRLRVELA HGGRRSSDDT RGSFNGGGRG
101: GGRGRGDGGS RGPSRRSEFR VLVTGLPSSA SWQDLKDHMR KGGDVCFSQV YRDARGTTGV VDYTCYEDMK YALKKLDDTE FRNAFSNGYV RVREYDSRKD
201: SRSPSRGRSY SKSRSRSRGR SVSRSRSRSR SRSRSPKAKS SRRSPAKSTS RSPGPRSKSR SPSPRRSRSR SRSPLPSVQK EGSKSPSKPS PAKSPIHTRS
301: PSR
101: GGRGRGDGGS RGPSRRSEFR VLVTGLPSSA SWQDLKDHMR KGGDVCFSQV YRDARGTTGV VDYTCYEDMK YALKKLDDTE FRNAFSNGYV RVREYDSRKD
201: SRSPSRGRSY SKSRSRSRGR SVSRSRSRSR SRSRSPKAKS SRRSPAKSTS RSPGPRSKSR SPSPRRSRSR SRSPLPSVQK EGSKSPSKPS PAKSPIHTRS
301: PSR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.