Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra018550.1-P | Field mustard | nucleus | 75.68 | 84.67 |
| CDY22050 | Canola | nucleus | 83.56 | 78.96 |
| CDY50385 | Canola | nucleus | 82.53 | 78.25 |
| CDX97264 | Canola | nucleus | 81.51 | 78.03 |
| Bra036267.1-P | Field mustard | nucleus | 82.88 | 77.56 |
| CDX91319 | Canola | nucleus | 79.11 | 77.26 |
| AT1G02840.1 | Thale cress | nucleus | 78.08 | 75.25 |
| KRH68188 | Soybean | nucleus | 69.86 | 68.23 |
| KRG96443 | Soybean | nucleus | 68.49 | 63.9 |
| KXG32406 | Sorghum | cytosol | 56.16 | 63.32 |
| VIT_07s0005g00320.t01 | Wine grape | nucleus | 66.44 | 62.99 |
| TraesCS3B01G293100.1 | Wheat | cytosol | 54.79 | 62.75 |
| TraesCS3D01G260200.1 | Wheat | cytosol | 54.45 | 62.35 |
| TraesCS3A01G260000.1 | Wheat | cytosol | 54.45 | 62.35 |
| TraesCS1A01G229900.1 | Wheat | cytosol, mitochondrion, nucleus | 53.77 | 62.06 |
| TraesCS1D01G232100.2 | Wheat | cytosol, mitochondrion, nucleus | 53.77 | 61.81 |
| EER94870 | Sorghum | mitochondrion, nucleus | 60.27 | 61.54 |
| Solyc09g075090.1.1 | Tomato | nucleus | 64.04 | 61.31 |
| Zm00001d047498_P003 | Maize | nucleus | 59.59 | 61.05 |
| PGSC0003DMT400029666 | Potato | nucleus | 65.75 | 60.95 |
| AT1G09140.1 | Thale cress | cytosol | 55.82 | 60.82 |
| Os03t0344100-02 | Rice | mitochondrion, nucleus | 59.25 | 60.49 |
| PGSC0003DMT400037966 | Potato | cytosol, extracellular, nucleus | 60.27 | 60.27 |
| HORVU2Hr1G019410.4 | Barley | mitochondrion, nucleus | 58.9 | 60.14 |
| KXG21829 | Sorghum | nucleus | 57.19 | 60.07 |
| TraesCS2A01G111600.2 | Wheat | mitochondrion, nucleus | 58.22 | 59.86 |
| TraesCS2D01G112200.1 | Wheat | nucleus | 57.88 | 59.51 |
| TraesCS1B01G244200.1 | Wheat | cytosol, mitochondrion, nucleus | 54.79 | 59.48 |
| Os07t0673500-01 | Rice | nucleus | 59.59 | 58.78 |
| TraesCS4D01G168700.1 | Wheat | mitochondrion, nucleus | 58.56 | 58.36 |
| TraesCS4B01G157000.1 | Wheat | mitochondrion, nucleus | 58.22 | 58.02 |
| HORVU4Hr1G046940.7 | Barley | mitochondrion, nucleus | 58.56 | 57.97 |
| TraesCS4A01G157700.1 | Wheat | mitochondrion | 57.53 | 56.76 |
| Zm00001d040672_P013 | Maize | nucleus | 56.51 | 56.31 |
| Zm00001d041673_P001 | Maize | cytosol | 21.58 | 55.26 |
| Os05t0364600-01 | Rice | nucleus | 59.93 | 54.86 |
| AT3G49430.4 | Thale cress | nucleus | 55.48 | 54.0 |
| GSMUA_Achr11P... | Banana | nucleus | 63.7 | 53.76 |
| GSMUA_Achr8P10150_001 | Banana | nucleus | 63.7 | 53.14 |
| TraesCS2B01G130400.1 | Wheat | nucleus | 58.22 | 49.13 |
| Zm00001d037925_P006 | Maize | cytosol, nucleus, plastid | 56.51 | 47.69 |
| HORVU3Hr1G064550.7 | Barley | nucleus, peroxisome | 54.79 | 47.62 |
| Solyc06g009060.2.1 | Tomato | nucleus | 35.96 | 40.08 |
| Os01t0316600-01 | Rice | plastid | 14.73 | 34.68 |
| AT2G37340.1 | Thale cress | nucleus | 28.42 | 28.62 |
| AT3G53500.2 | Thale cress | mitochondrion, nucleus | 26.71 | 27.46 |
| Zm00001d009821_P001 | Maize | plastid | 27.74 | 25.47 |
Protein Annotations
| MapMan:16.4.6.1 | Gene3D:3.30.70.330 | EntrezGene:828027 | UniProt:A0A1P8B3U4 | ProteinID:ANM66288.1 | ArrayExpress:AT4G02430 |
| EnsemblPlantsGene:AT4G02430 | RefSeq:AT4G02430 | TAIR:AT4G02430 | RefSeq:AT4G02430-TAIR-G | EnsemblPlants:AT4G02430.4 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | RefSeq:NP_001328194.1 |
| InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR43933 | PANTHER:PTHR43933:SF7 | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | SMART:SM00360 | Symbol:SR34b | SUPFAM:SSF54928 | UniParc:UPI000848D005 | SEG:seg |
Description
SR34bRNA-binding (RRM/RBD/RNP motifs) family protein [Source:TAIR;Acc:AT4G02430]
Coordinates
chr4:+:1068974..1072223
Molecular Weight (calculated)
32963.1 Da
IEP (calculated)
11.044
GRAVY (calculated)
-1.152
Length
292 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSRSSRTIY VGNLPGDIRE REVEDLFSKY GPVVQIDLKI PPRPPGYAFV EFEDARDADD AIYGRDGYDF DGHHLRVELA HGGRRSSHDA RGSYSGRGRG
101: GRGGGDGGGR ERGPSRRSEY RVVVSGLPSS ASWQDLKDHM RKGGEVCFSQ VFRDGRGTTG IVDYTSYEDM KYALDDTEFR NAFSHEYVRV REYDSRRDSR
201: SPSRGRSYSK SRSRGRSPSR SRSRSRSRSK SRSPKAKSLR RSPAKSTSRS PRSRSRSKSR SLSPRGGETL DRIDIVSSKW THRARTDIFI TC
101: GRGGGDGGGR ERGPSRRSEY RVVVSGLPSS ASWQDLKDHM RKGGEVCFSQ VFRDGRGTTG IVDYTSYEDM KYALDDTEFR NAFSHEYVRV REYDSRRDSR
201: SPSRGRSYSK SRSRGRSPSR SRSRSRSRSK SRSPKAKSLR RSPAKSTSRS PRSRSRSKSR SLSPRGGETL DRIDIVSSKW THRARTDIFI TC
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.