Factsheet for Solyc06g009060.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 25464976
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g005820.2.1
Solyc01g080660.2.1
Solyc01g105140.2.1
Solyc02g085420.2.1
Solyc04g056280.2.1
Solyc05g054920.2.1
Solyc07g066420.2.1
Solyc09g005980.2.1
Solyc09g098390.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G02840.1	Solyc07g066420.2.1	AT1G53720.1	16497658
AT1G02840.1	Solyc05g054920.2.1	AT2G37340.1	18674533
AT1G02840.1	Solyc09g005980.2.1	AT2G37340.1	18674533
AT1G02840.1	Solyc09g098390.2.1	AT2G43370.1	15987817
AT1G02840.1	Solyc01g005820.2.1	AT3G13570.1	18674533
AT1G02840.1	Solyc02g085420.2.1	AT3G50670.1	18674533
AT1G02840.1	Solyc01g080660.2.1	AT5G18810.1	18674533
AT1G02840.1	Solyc01g105140.2.1	AT5G64200.2	18674533
AT1G02840.1	Solyc04g056280.2.1	AT5G64960.1	18208522

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400037966	Potato	cytosol, extracellular, nucleus	57.25	51.37
KRG96443	Soybean	nucleus	51.91	43.45
HORVU2Hr1G019410.4	Barley	mitochondrion, nucleus	46.56	42.66
Os03t0344100-02	Rice	mitochondrion, nucleus	46.18	42.31
KXG32406	Sorghum	cytosol	41.6	42.08
CDX97264	Canola	nucleus	48.85	41.97
Solyc09g075090.1.1	Tomato	nucleus	48.85	41.97
TraesCS2A01G111600.2	Wheat	mitochondrion, nucleus	45.42	41.9
EER94870	Sorghum	mitochondrion, nucleus	45.42	41.61
TraesCS2D01G112200.1	Wheat	nucleus	45.04	41.55
Os07t0673500-01	Rice	nucleus	46.56	41.22
CDX91319	Canola	nucleus	46.95	41.14
Zm00001d047498_P003	Maize	nucleus	44.27	40.7
CDY22050	Canola	nucleus	47.71	40.45
Bra036267.1-P	Field mustard	nucleus	48.09	40.38
TraesCS4D01G168700.1	Wheat	mitochondrion, nucleus	45.04	40.27
AT1G02840.1	Thale cress	nucleus	46.56	40.26
TraesCS3D01G260200.1	Wheat	cytosol	38.93	40.0
TraesCS3B01G293100.1	Wheat	cytosol	38.93	40.0
TraesCS3A01G260000.1	Wheat	cytosol	38.93	40.0
VIT_07s0005g00320.t01	Wine grape	nucleus	46.95	39.94
CDY50385	Canola	nucleus	46.95	39.94
TraesCS4B01G157000.1	Wheat	mitochondrion, nucleus	44.66	39.93
HORVU4Hr1G046940.7	Barley	mitochondrion, nucleus	44.66	39.66
KXG21829	Sorghum	nucleus	41.6	39.21
TraesCS4A01G157700.1	Wheat	mitochondrion	44.27	39.19
TraesCS1B01G244200.1	Wheat	cytosol, mitochondrion, nucleus	40.08	39.03
TraesCS1D01G232100.2	Wheat	cytosol, mitochondrion, nucleus	37.79	38.98
GSMUA_Achr8P10150_001	Banana	nucleus	51.91	38.86
TraesCS1A01G229900.1	Wheat	cytosol, mitochondrion, nucleus	37.4	38.74
Bra018550.1-P	Field mustard	nucleus	37.79	37.93
GSMUA_Achr11P...	Banana	nucleus	50.0	37.86
Zm00001d040672_P013	Maize	nucleus	41.98	37.54
KRH68188	Soybean	nucleus	42.37	37.12
Os05t0364600-01	Rice	nucleus	45.04	36.99
Solyc01g099810.2.1	Tomato	nucleus	36.26	35.98
AT4G02430.4	Thale cress	nucleus	40.08	35.96
TraesCS2B01G130400.1	Wheat	nucleus	45.8	34.68
Solyc03g082380.2.1	Tomato	nucleus	35.11	32.86
HORVU3Hr1G064550.7	Barley	nucleus, peroxisome	39.69	30.95
Zm00001d037925_P006	Maize	cytosol, nucleus, plastid	35.88	27.17
Zm00001d041673_P001	Maize	cytosol	10.69	24.56
Solyc05g054920.2.1	Tomato	nucleus	22.9	17.8
Solyc09g005980.2.1	Tomato	nucleus	21.37	17.78
Zm00001d009821_P001	Maize	plastid	11.45	9.43
Os01t0316600-01	Rice	plastid	2.29	4.84

Protein Annotations

EnsemblPlants:Solyc06g009060.2.1	EnsemblPlantsGene:Solyc06g009060.2	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom
PANTHER:PTHR43933	PANTHER:PTHR43933:SF6	PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI0002766B0A	UniProt:K4C3T6	MapMan:16.4.6.1	:	:

Description

No Description!

Coordinates

chr6:-:2982856..2990074

Molecular Weight (calculated)

29727.9 Da

IEP (calculated)

12.482

GRAVY (calculated)

-1.437

Length

262 amino acids

Sequence
(BLAST)

001: MVVVIITNLE RPNVPSIEAL LVTGLPHSAS WQDLKDHMRR AGDVCFSQVF REGSGTTGIV DYTNYDDMKY AIKKLDESEF RNAFSRSTIR VKEHDSRSRS
101: RSRSYSRGKS GSRSRSRSYS RSRSRSKSPK AKSSKRTRSR SRSVSSQPRS GLKGRSLSRS PSRSRSPVPS RPKRVSKSPK PRDSRRSQSL SKSPKPRDSR
201: RSESPSKSPK LRDSRRSKSM SKSPEPRNSR RSPSRSKSPK PRNSRRSPSR SRSRSRSGSL SR

Best Arabidopsis Sequence Match ( AT1G02840.1 )
(BLAST)

001: MSSRSSRTVY VGNLPGDIRE REVEDLFSKY GPVVQIDLKV PPRPPGYAFV EFDDARDAED AIHGRDGYDF DGHRLRVELA HGGRRSSDDT RGSFNGGGRG
101: GGRGRGDGGS RGPSRRSEFR VLVTGLPSSA SWQDLKDHMR KGGDVCFSQV YRDARGTTGV VDYTCYEDMK YALKKLDDTE FRNAFSNGYV RVREYDSRKD
201: SRSPSRGRSY SKSRSRSRGR SVSRSRSRSR SRSRSPKAKS SRRSPAKSTS RSPGPRSKSR SPSPRRSRSR SRSPLPSVQK EGSKSPSKPS PAKSPIHTRS
301: PSR

Arabidopsis Description

SR34Serine/arginine-rich-splicing factor SR34 [Source:UniProtKB/Swiss-Prot;Acc:O22315]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.