CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88795
EER91800
EER92211
EER95096
EER97037
EER97602
EES00292
EES10309
EES15089
EES16196
EES18924
KXG21152
KXG21387
KXG21391
KXG36736
KXG37841
KXG39239
KXG39307
KXG39705
OQU77498
OQU88590

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G02840.1	EER88795	AT1G53720.1	16497658
AT1G02840.1	EES00292	AT2G37340.1	18674533
AT1G02840.1	EES18924	AT2G37340.1	18674533
AT1G02840.1	KXG21152	AT2G37340.1	18674533
AT1G02840.1	KXG21387	AT2G37340.1	18674533
AT1G02840.1	KXG21391	AT2G37340.1	18674533
AT1G02840.1	OQU77498	AT2G37340.1	18674533
AT1G02840.1	EER97037	AT2G43370.1	15987817
AT1G02840.1	EER92211	AT3G13570.1	18674533
AT1G02840.1	EER97602	AT3G13570.1	18674533
AT1G02840.1	EER91800	AT3G50670.1	18674533
AT1G02840.1	EER95096	AT3G50670.1	18674533
AT1G02840.1	EES10309	AT3G55460.1	18674533
AT1G02840.1	EES16196	AT3G55460.1	18674533
AT1G02840.1	KXG39307	AT5G18810.1	18674533
AT1G02840.1	KXG36736	AT5G64200.2	18674533
AT1G02840.1	KXG39239	AT5G64200.2	18674533
AT1G02840.1	EES15089	AT5G64960.1	18208522
AT1G09140.1	EER88795	AT1G53720.1	16497658
AT1G09140.1	KXG39705	AT2G29210.1	21798944
AT1G09140.1	EER92211	AT3G13570.1	18674533
AT1G09140.1	EER97602	AT3G13570.1	18674533
AT1G09140.1	EES10309	AT3G55460.1	18674533
AT1G09140.1	EES16196	AT3G55460.1	18674533
AT1G09140.1	KXG37841	AT5G04280.1	21798944
AT1G09140.1	OQU88590	AT5G04280.1	21798944
AT1G09140.1	KXG39307	AT5G18810.1	18674533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G232100.2	Wheat	cytosol, mitochondrion, nucleus	73.74	80.71
TraesCS1A01G229900.1	Wheat	cytosol, mitochondrion, nucleus	73.38	80.63
TraesCS1B01G244200.1	Wheat	cytosol, mitochondrion, nucleus	76.26	78.81
KXG32406	Sorghum	cytosol	71.94	77.22
Os05t0364600-01	Rice	nucleus	85.61	74.61
Zm00001d037925_P006	Maize	cytosol, nucleus, plastid	86.33	69.36
Bra018581.1-P	Field mustard	cytosol	57.55	68.97
EER94870	Sorghum	mitochondrion, nucleus	68.7	66.78
CDY66028	Canola	cytosol	59.71	65.61
Solyc01g099810.2.1	Tomato	nucleus	62.23	65.53
VIT_14s0060g02290.t01	Wine grape	nucleus	67.63	65.28
AT1G09140.1	Thale cress	cytosol	59.71	61.94
KRG92904	Soybean	nucleus	61.15	61.59
CDX91319	Canola	nucleus	64.75	60.2
CDX97264	Canola	nucleus	64.75	59.02
Bra018550.1-P	Field mustard	nucleus	55.04	58.62
VIT_07s0005g00320.t01	Wine grape	nucleus	64.75	58.44
CDY22050	Canola	nucleus	64.75	58.25
KRG96443	Soybean	nucleus	65.47	58.15
PGSC0003DMT400029666	Potato	nucleus	65.83	58.1
Bra036267.1-P	Field mustard	nucleus	65.11	58.01
CDY50385	Canola	nucleus	64.03	57.79
AT1G02840.1	Thale cress	nucleus	62.59	57.43
AT4G02430.4	Thale cress	nucleus	60.07	57.19
Solyc09g075090.1.1	Tomato	nucleus	62.59	57.05
PGSC0003DMT400037966	Potato	cytosol, extracellular, nucleus	59.71	56.85
KRH68188	Soybean	nucleus	60.43	56.19
CDX95008	Canola	nucleus	58.27	51.1
PGSC0003DMT400063701	Potato	nucleus	55.4	46.67
Solyc06g009060.2.1	Tomato	nucleus	39.21	41.6
KXG21152	Sorghum	nucleus	35.97	32.05
EES00292	Sorghum	nucleus	32.37	30.41
KXG21387	Sorghum	nucleus	26.62	27.92
EES18924	Sorghum	nucleus	33.09	26.98
OQU77498	Sorghum	nucleus	10.43	26.13
KXG21391	Sorghum	nucleus	24.82	17.25

Protein Annotations

MapMan:16.4.6.1	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
InterPro:IPR000504	InterPro:IPR012677	EMBL:KC425095	EnsemblPlants:KXG21829	ProteinID:KXG21829	ProteinID:KXG21829.1
UniProt:M1HJ45	InterPro:Nucleotide-bd_a/b_plait_sf	ProteinID:OQU77858.1	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR43933
PANTHER:PTHR43933:SF1	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	EnsemblPlantsGene:SORBI_3009G113100	SUPFAM:SSF54928
UniParc:UPI0001C805EB	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:45336844..45341261

Molecular Weight (calculated)

31579.7 Da

IEP (calculated)

10.943

GRAVY (calculated)

-1.112

Length

278 amino acids

Sequence
(BLAST)

001: MTRRNGCTIY VGNLPGDIRE REVDDLFYKY GRIVEIDLKI PPRPPGFAFV EFEDPHDAED AIYGRDGYNF DGHRLRVELA HGGRGPSSFD RSSSYSSAGQ
101: RGASKRSDYR VMVTGLPSSA SWQDLKDHMR RAGDVCFTDV YREAGATIGI ADYTNYEDMK HAIRKLDDSE FRNAFSRTYI RVREYDARRS RSRSRGRSRS
201: RSKSRSRSHS RSYSRSRSRS YSKSRSPRSR SASQSKSPVK ARSPSRSPPV SPPRDKSISR SPARSKSLPR SCSPAKPE

Best Arabidopsis Sequence Match ( AT1G02840.3 )
(BLAST)

001: MSSRSSRTVY VGNLPGDIRE REVEDLFSKY GPVVQIDLKV PPRPPGYAFV EFDDARDAED AIHGRDGYDF DGHRLRVELA HGGRRSSDDT RGSFNGGGRG
101: GGRGRGDGGS RGPSRRSEFR VLVTGLPSSA SWQDLKDHMR KGGDVCFSQV YRDARGTTGV VDYTCYEDMK YALKKLDDTE FRNAFSNGYV RVREYDSRKD
201: SRSPSRGRSY SKSRSRSRGR SVSRSRSRSR SRSRSPKAKS SRRSPAKSTS RSPGPRSKSR SPSPRRYGFT YD

Arabidopsis Description

SR34Serine/arginine-rich-splicing factor SR34 [Source:UniProtKB/Swiss-Prot;Acc:O22315]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.