CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER87987
EER88795
EER91800
EER92211
EER94870
EER95096
EER97037
EER97602
EES07659
EES10309
EES16196
KXG21829
KXG32406
KXG36736
KXG39239
KXG39307
OQU85289

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G37340.1	EER94870	AT1G02840.1	18674533
AT2G37340.1	KXG21829	AT1G02840.1	18674533
AT2G37340.1	KXG32406	AT1G02840.1	18674533
AT2G37340.1	EER88795	AT1G53720.1	16497658
AT2G37340.1	EER97037	AT2G43370.1	15987817
AT2G37340.1	EER92211	AT3G13570.1	18674533
AT2G37340.1	EER97602	AT3G13570.1	18674533
AT2G37340.1	EER91800	AT3G50670.1	18674533
AT2G37340.1	EER95096	AT3G50670.1	18674533
AT2G37340.1	EES10309	AT3G55460.1	18674533
AT2G37340.1	EES16196	AT3G55460.1	18674533
AT2G37340.1	EES10309	AT3G55460.1	21798944
AT2G37340.1	EES16196	AT3G55460.1	21798944
AT2G37340.1	EER87987	AT4G31580.1	18674533
AT2G37340.1	EES07659	AT4G31580.1	18674533
AT2G37340.1	OQU85289	AT4G31580.1	18674533
AT2G37340.1	KXG39307	AT5G18810.1	18674533
AT2G37340.1	KXG36736	AT5G64200.2	18674533
AT2G37340.1	KXG39239	AT5G64200.2	18674533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU77498	Sorghum	nucleus	12.5	45.05
KXG21387	Sorghum	nucleus	29.0	43.77
KXG21152	Sorghum	nucleus	31.0	39.74
TraesCS1A01G108000.2	Wheat	nucleus	27.25	39.21
CDX80835	Canola	nucleus	25.75	38.87
KRG95876	Soybean	nucleus	27.75	38.68
TraesCS1D01G111000.2	Wheat	nucleus	27.75	38.68
TraesCS1B01G130200.3	Wheat	nucleus	27.75	38.68
KRH67593	Soybean	endoplasmic reticulum	27.75	38.68
PGSC0003DMT400060435	Potato	nucleus	29.0	38.67
EES00292	Sorghum	nucleus	28.5	38.51
CDY11223	Canola	nucleus	25.25	38.4
CDX79732	Canola	nucleus	27.75	37.88
CDX78183	Canola	nucleus	26.75	37.81
HORVU1Hr1G024060.21	Barley	nucleus	28.25	37.79
CDX73550	Canola	nucleus	26.75	37.68
AT2G37340.1	Thale cress	nucleus	27.25	37.59
AT3G53500.2	Thale cress	mitochondrion, nucleus	26.5	37.32
CDY07586	Canola	mitochondrion, nucleus	26.5	36.81
Solyc09g005980.2.1	Tomato	nucleus	28.75	36.51
Bra003139.1-P	Field mustard	mitochondrion, nucleus	26.5	36.43
CDY52755	Canola	mitochondrion, nucleus	26.5	36.43
Bra007004.1-P	Field mustard	nucleus	27.0	36.36
GSMUA_Achr10P...	Banana	nucleus	29.5	36.31
Bra005756.1-P	Field mustard	nucleus	20.75	36.09
CDY46773	Canola	nucleus	28.5	36.08
Bra023114.1-P	Field mustard	nucleus	28.5	36.08
GSMUA_Achr6P15450_001	Banana	nucleus	30.25	35.91
PGSC0003DMT400061471	Potato	nucleus	28.25	35.87
KRH67596	Soybean	nucleus	26.75	35.79
KRG95883	Soybean	nucleus	26.25	35.35
EES18924	Sorghum	nucleus	29.5	34.6
Solyc05g054920.2.1	Tomato	nucleus	29.0	34.42
VIT_08s0040g02860.t01	Wine grape	nucleus	22.75	34.21
Os05t0162600-01	Rice	nucleus	25.25	29.88
KRH42195	Soybean	endoplasmic reticulum	20.5	29.82
KXG32406	Sorghum	cytosol	16.25	25.1
KXG21829	Sorghum	nucleus	17.25	24.82
EER94870	Sorghum	mitochondrion, nucleus	16.5	23.08
KRH58317	Soybean	nucleus	12.0	21.92

Protein Annotations

MapMan:16.4.6.5	Gene3D:3.30.70.330	Gene3D:4.10.60.10	UniProt:A0A1B6P717	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0008270	InterPro:IPR000504	InterPro:IPR001878	InterPro:IPR012677
EnsemblPlants:KXG21391	ProteinID:KXG21391	ProteinID:KXG21391.1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF00098
PFscan:PS50102	PFscan:PS50158	PANTHER:PTHR23147	PANTHER:PTHR23147:SF39	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00343	SMART:SM00360	EnsemblPlantsGene:SORBI_3009G056100	SUPFAM:SSF54928	SUPFAM:SSF57756	UniParc:UPI00081ADB49
InterPro:Znf_CCHC	InterPro:Znf_CCHC_sf	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:5677143..5688140

Molecular Weight (calculated)

44952.1 Da

IEP (calculated)

10.058

GRAVY (calculated)

-1.238

Length

400 amino acids

Sequence
(BLAST)

001: MGFKIKYKQQ MRDRDVVASG GAGGDGGGSS EATQPKSPPR EPSPLPRRSP PPPREPAPSP RRSPTPPDAE SKIPRRKDHC DPYDHSGQHG STTKLYVGNM
101: SRYTRERDLE AAFGRYGRLV TVYLQGRNYG FVVFYDPKDA DAARNGLDGQ EICGSHITVQ FAREHKMTRY DTRYIHDDQN DQQDGNSKLF VSNISSLTQE
201: NDISDLFSKY GRVRKTNLKE NYGFVEFCDP QDADDARCEL NGQEFNGNRI SVKFATGVPR GPVDSAQILC YNCGAEGHFS SDCKAGDWKD RCYRCGEKGH
301: LKRNCRNRPK DIGRRRSHSR SQSPGHGMGR SWRYRSRSRG YSSQPPSPTR GNRNTGGEEL PSRSPCYSHH PRSRSSPPPP REPAKRSGSL RDAVPRRGQR

Best Arabidopsis Sequence Match ( AT2G37340.1 )
(BLAST)

001: MPRYDDRYGN TRLYVGRLSS RTRTRDLERL FSRYGRVRDV DMKRDYAFVE FGDPRDADDA RHYLDGRDFD GSRITVEFSR GAPRGSRDFD SRGPPPGAGR
101: CFNCGVDGHW ARDCTAGDWK NKCYRCGERG HIERNCKNSP KKLRRSGSYS RSPVRSRSPR RRRSPSRSLS RSRSYSRSRS PVRRRERSVE ERSRSPKRMD
201: DSLSPRARDR SPVLDDEGSP KIIDGSPPPS PKLQKEVGSD RDGGSPQDNG RNSVVSPVVG AGGDSSKEDR SPVDDDYEPN RTSPRGSESP

Arabidopsis Description

RS2Z33Serine/arginine-rich splicing factor RS2Z33 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYA5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.