CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER91800
EER94870
EER95096
EES00292
EES00987
EES14515
EES14795
EES18924
KXG21152
KXG21387
KXG21391
KXG21829
KXG30551
KXG32406
KXG35096
KXG37288
OQU77498

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24590.1	EER94870	AT1G09140.1	21798944
AT2G24590.1	KXG21829	AT1G09140.1	21798944
AT2G24590.1	KXG32406	AT1G09140.1	21798944
AT2G24590.1	EES14795	AT3G21215.1	21798944
AT2G24590.1	EES00987	AT4G32660.1	21798944
AT2G24590.1	EES14515	AT5G54580.1	21798944
AT4G31580.1	EES00292	AT2G37340.1	18674533
AT4G31580.1	EES18924	AT2G37340.1	18674533
AT4G31580.1	KXG21152	AT2G37340.1	18674533
AT4G31580.1	KXG21387	AT2G37340.1	18674533
AT4G31580.1	KXG21391	AT2G37340.1	18674533
AT4G31580.1	OQU77498	AT2G37340.1	18674533
AT4G31580.1	EER91800	AT3G50670.1	10593939
AT4G31580.1	EER95096	AT3G50670.1	10593939
AT4G31580.1	EER91800	AT3G50670.1	9761791
AT4G31580.1	EER95096	AT3G50670.1	9761791
AT4G31580.1	KXG30551	AT4G24740.1	10593939
AT4G31580.1	KXG35096	AT4G24740.1	10593939
AT4G31580.1	KXG37288	AT4G24740.1	10593939

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES07659	Sorghum	nucleus	81.18	92.64
Os06t0187900-02	Rice	nucleus	89.25	89.73
TraesCS7B01G056600.2	Wheat	nucleus	83.33	84.7
TraesCSU01G104300.1	Wheat	nucleus	82.26	84.07
TraesCS7A01G152800.1	Wheat	nucleus	82.26	84.07
GSMUA_Achr4P09230_001	Banana	nucleus	79.57	82.22
GSMUA_Achr8P24800_001	Banana	nucleus	80.11	81.87
VIT_04s0069g00800.t01	Wine grape	nucleus	68.28	70.17
PGSC0003DMT400067677	Potato	nucleus	67.74	68.85
PGSC0003DMT400075974	Potato	nucleus	66.67	67.76
KRH16160	Soybean	endoplasmic reticulum	63.98	66.85
KRH04931	Soybean	nucleus	63.98	66.85
Zm00001d045076_P001	Maize	nucleus	74.19	66.03
CDX72313	Canola	nucleus	68.82	64.97
CDY13444	Canola	nucleus	68.82	64.32
AT4G31580.1	Thale cress	nucleus	68.82	64.0
Bra023994.1-P	Field mustard	nucleus	68.28	63.82
AT2G24590.1	Thale cress	nucleus	66.13	62.76
CDY45585	Canola	nucleus	62.37	59.18
CDY20328	Canola	nucleus	62.37	59.18
Bra032082.1-P	Field mustard	nucleus	62.9	57.64
HORVU7Hr1G031320.1	Barley	nucleus	83.33	53.82
Solyc08g069120.2.1	Tomato	nucleus	66.67	51.03
VIT_10s0042g00400.t01	Wine grape	endoplasmic reticulum, extracellular	9.68	46.15
OQU85289	Sorghum	plastid	74.73	43.85

Protein Annotations

MapMan:16.4.6.4	Gene3D:3.30.70.330	Gene3D:4.10.60.10	EntrezGene:8065435	UniProt:C5Z5V6	EnsemblPlants:EER87987
ProteinID:EER87987	ProteinID:EER87987.1	ProteinID:EER89357.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0008270	InterPro:IPR000504	InterPro:IPR001878	InterPro:IPR012677	EMBL:KC425054
EMBL:KC425056	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF00098	PFscan:PS50102	PFscan:PS50158
PANTHER:PTHR23147	PANTHER:PTHR23147:SF26	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00343	SMART:SM00360
EnsemblPlantsGene:SORBI_3010G068400	SUPFAM:SSF54928	SUPFAM:SSF57756	unigene:Sbi.6538	UniParc:UPI0001A89204	RefSeq:XP_002436620.1
InterPro:Znf_CCHC	InterPro:Znf_CCHC_sf	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr10:+:5487018..5490926

Molecular Weight (calculated)

21343.8 Da

IEP (calculated)

11.715

GRAVY (calculated)

-1.307

Length

186 amino acids

Sequence
(BLAST)

001: MARLYVGNLD PRVTARELED EFRTFGVLRS VWVARKPPGF AFIDFDDKRD AEDAIRDLDG KNGWRVELSR NASSGRGGRD RYGGSESKCY ECGETGHFAR
101: ECRLRIGSGG LGSGRRRSRS RSRSRSRSPR YRRSPSYGRR SYSPAARSPR RRSVSPARGR SYSRSPQYKR AREDSPYDNG YRRSRS

Best Arabidopsis Sequence Match ( AT4G31580.1 )
(BLAST)

001: MSRVYVGNLD PRVTERELED EFRAFGVVRS VWVARRPPGY AFLDFEDPRD ARDAIRALDG KNGWRVEQSH NRGERGGGGR GGDRGGGGGG RGGRGGSDLK
101: CYECGETGHF ARECRNRGGT GRRRSKSRSR TPPRYRRSPS YGRRSYSPRA RSPPPPRRRS PSPPPARGRS YSRSPPPYRA REEVPYANGN GLKERRRSRS

Arabidopsis Description

RSZ22Serine/arginine-rich splicing factor RSZ22 [Source:UniProtKB/Swiss-Prot;Acc:O81126]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.