CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 6
cytosol 2
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
Predotar:	plastid
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG21224
KXG34492

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G21215.1	KXG21224	AT3G17310.1	21798944
AT3G21215.1	KXG34492	AT3G22440.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d049346_P001	Maize	plastid	89.38	88.82
TraesCS7D01G290200.1	Wheat	nucleus, plastid	78.12	78.37
TraesCS7A01G287800.1	Wheat	nucleus, plastid	78.12	78.37
TraesCS7B01G182400.1	Wheat	nucleus, plastid	76.88	77.12
HORVU7Hr1G067800.6	Barley	plastid	77.81	72.38
CDY37307	Canola	nucleus	45.31	68.4
VIT_09s0018g01880.t01	Wine grape	nucleus	63.75	68.23
GSMUA_Achr2P05000_001	Banana	cytosol	64.06	67.88
Bra023895.1-P	Field mustard	nucleus	62.81	65.69
GSMUA_Achr9P19610_001	Banana	cytosol	62.19	65.03
KRH44644	Soybean	nucleus	63.12	63.72
AT3G21215.1	Thale cress	nucleus	65.31	61.65
Solyc03g123840.2.1	Tomato	nucleus	61.56	61.56
CDY27533	Canola	nucleus	64.06	59.77
PGSC0003DMT400023680	Potato	plastid	61.25	59.04
KRH47009	Soybean	nucleus	63.12	57.71
CDY06428	Canola	nucleus	43.12	44.66
EER88849	Sorghum	nucleus	26.56	27.42
KXG19320	Sorghum	nucleus	23.44	25.0

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.2	EntrezGene:8073260	UniProt:C5YJK9	EnsemblPlants:EES14795	ProteinID:EES14795
ProteinID:EES14795.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488
InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR45381
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	EnsemblPlantsGene:SORBI_3007G091600	SUPFAM:SSF54928	unigene:Sbi.15913
UniParc:UPI0001A87F4A	RefSeq:XP_002445300.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr7:-:15259603..15264656

Molecular Weight (calculated)

33876.4 Da

IEP (calculated)

8.226

GRAVY (calculated)

-0.200

Length

320 amino acids

Sequence
(BLAST)

001: MAGAGIHPFQ WPPAAAAPPP PGAAASVAVP PPPPVPGAPG TVAADEVRTI FITGLPADVK ERELHNLLRW LPGFEASQIN FKGDQPMGFA LFSSAHQAIA
101: AKAALQDMVF DAETQVALHT EMAKKNLFVK RGVGIDANAV DQSKRLRTGG DYTHSPYAPP FHPPPPAVSM WGTPGYITAP PPYNPYAAYP VPPVAMTSPS
201: PVTGPTAYAP VQNTKDNPPC NTLFIGNLGD TVVEEELRSL FSVQPGYKQM KVLRQDRNTV CFIEFEDVNA ATSVHQTLQG AVIPSSGRGG MRIQFSKNPF
301: GRRKDSAGGL ASVLNGAPVN

Best Arabidopsis Sequence Match ( AT3G21215.2 )
(BLAST)

001: MAGAGIHPYH QQWPPAGAPP PPAAVSSAAP PHPPPIHHHP PPPPVLVDNH NRPPYDELRT IFIAGLPDDV KERELLNLLR WLPGYEASQV NFKGEKPMGF
101: ALFSTAQFAM AAKDTLQHMV FDAESKSVIH TEMAKKNLFV KRGIVGDSNA YDQSKRLRTG GDCTHSVYSP SPFHPPPPPV WGPPHGYMAP APPPYDPYAG
201: YHAPPVPMPT PPPIAAPSSY VPVQNIKDNP PCNTLFIGNL GENINEEELR SLLSAQPGFK QMKILRQERH TVCFIEFEDV NSATNVHHNL QGAVIPSSGS
301: IGMRIQYSKN PYGKRKEGGG YSFFPSPSAN GAQGALTYQ

Arabidopsis Description

AT3G21215 protein [Source:UniProtKB/TrEMBL;Acc:Q9ASW4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.