Factsheet for TraesCS7B01G182400.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 3
nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G495700.1
TraesCS5A01G051400.2
TraesCS5A01G434500.1
TraesCS5B01G057300.1
TraesCS5B01G437500.2
TraesCS5D01G062400.2
TraesCS5D01G442300.1
TraesCS7A01G002900.3
TraesCS7D01G003200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G21215.1	TraesCS4A01G495700.1	AT3G17310.1	21798944
AT3G21215.1	TraesCS5A01G051400.2	AT3G17310.1	21798944
AT3G21215.1	TraesCS5B01G057300.1	AT3G17310.1	21798944
AT3G21215.1	TraesCS5D01G062400.2	AT3G17310.1	21798944
AT3G21215.1	TraesCS7A01G002900.3	AT3G17310.1	21798944
AT3G21215.1	TraesCS7D01G003200.1	AT3G17310.1	21798944
AT3G21215.1	TraesCS5A01G434500.1	AT3G22440.1	21798944
AT3G21215.1	TraesCS5B01G437500.2	AT3G22440.1	21798944
AT3G21215.1	TraesCS5D01G442300.1	AT3G22440.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G290200.1	Wheat	nucleus, plastid	97.49	97.49
TraesCS7A01G287800.1	Wheat	nucleus, plastid	96.87	96.87
HORVU7Hr1G067800.6	Barley	plastid	94.04	87.21
EES14795	Sorghum	plastid	77.12	76.88
Zm00001d049346_P001	Maize	plastid	73.67	72.98
VIT_09s0018g01880.t01	Wine grape	nucleus	64.58	68.9
GSMUA_Achr2P05000_001	Banana	cytosol	64.89	68.54
CDY37307	Canola	nucleus	45.45	68.4
Bra023895.1-P	Field mustard	nucleus	63.01	65.69
GSMUA_Achr9P19610_001	Banana	cytosol	63.01	65.69
KRH44644	Soybean	nucleus	63.32	63.72
Solyc03g123840.2.1	Tomato	nucleus	63.64	63.44
AT3G21215.1	Thale cress	nucleus	66.14	62.24
CDY27533	Canola	nucleus	65.2	60.64
PGSC0003DMT400023680	Potato	plastid	63.01	60.54
KRH47009	Soybean	nucleus	63.95	58.29
CDY06428	Canola	nucleus	42.01	43.37
TraesCS7B01G005000.1	Wheat	mitochondrion, nucleus	23.82	25.59
TraesCS7B01G342500.1	Wheat	nucleus	25.39	25.55

Protein Annotations

EnsemblPlants:TraesCS7B01G182400.1	EnsemblPlantsGene:TraesCS7B01G182400	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003729	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR45381	PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360
SUPFAM:SSF54928	TIGR:cd12245	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr7B:-:284144857..284150127

Molecular Weight (calculated)

34169.1 Da

IEP (calculated)

8.263

GRAVY (calculated)

-0.231

Length

319 amino acids

Sequence
(BLAST)

001: MAGAGIHPFH QQWPPQAAVP APPAVPPPPP VPGAPDAAAR PGSDEVRTIF IMGLPVDVKE RELHNLLRWL PGFEASQINF KGDQPMGFAL FSYAHHAIAA
101: KAALQDLVFD AETKSALHIE MAKKNLFIKR GVGTDANAMD QSKRLRTGED YTHSAHAPPP FHPPPPAVSM WGTAGYMAAP PPYNPYAGYP VPAVPMASPS
201: PLPGPTAYAP VQNMKDNPPC NTLFIGNLGE TVVEEELRGL FSLQPGFKQM KVLRQDRNTV CFIEFDDVSA ASAVHHTLQG AVVPSSGRGG MRIQFSKNPF
301: GRRKDLVGGM VGTLNGAPV

Best Arabidopsis Sequence Match ( AT3G21215.2 )
(BLAST)

001: MAGAGIHPYH QQWPPAGAPP PPAAVSSAAP PHPPPIHHHP PPPPVLVDNH NRPPYDELRT IFIAGLPDDV KERELLNLLR WLPGYEASQV NFKGEKPMGF
101: ALFSTAQFAM AAKDTLQHMV FDAESKSVIH TEMAKKNLFV KRGIVGDSNA YDQSKRLRTG GDCTHSVYSP SPFHPPPPPV WGPPHGYMAP APPPYDPYAG
201: YHAPPVPMPT PPPIAAPSSY VPVQNIKDNP PCNTLFIGNL GENINEEELR SLLSAQPGFK QMKILRQERH TVCFIEFEDV NSATNVHHNL QGAVIPSSGS
301: IGMRIQYSKN PYGKRKEGGG YSFFPSPSAN GAQGALTYQ

Arabidopsis Description

AT3G21215 protein [Source:UniProtKB/TrEMBL;Acc:Q9ASW4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.