Factsheet for TraesCS7D01G290200.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, plastid

Predictor Summary:

plastid 3
nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G495700.1
TraesCS5A01G051400.2
TraesCS5A01G434500.1
TraesCS5B01G057300.1
TraesCS5B01G437500.2
TraesCS5D01G062400.2
TraesCS5D01G442300.1
TraesCS7A01G002900.3
TraesCS7D01G003200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G21215.1	TraesCS4A01G495700.1	AT3G17310.1	21798944
AT3G21215.1	TraesCS5A01G051400.2	AT3G17310.1	21798944
AT3G21215.1	TraesCS5B01G057300.1	AT3G17310.1	21798944
AT3G21215.1	TraesCS5D01G062400.2	AT3G17310.1	21798944
AT3G21215.1	TraesCS7A01G002900.3	AT3G17310.1	21798944
AT3G21215.1	TraesCS7D01G003200.1	AT3G17310.1	21798944
AT3G21215.1	TraesCS5A01G434500.1	AT3G22440.1	21798944
AT3G21215.1	TraesCS5B01G437500.2	AT3G22440.1	21798944
AT3G21215.1	TraesCS5D01G442300.1	AT3G22440.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G287800.1	Wheat	nucleus, plastid	98.12	98.12
TraesCS7B01G182400.1	Wheat	nucleus, plastid	97.49	97.49
HORVU7Hr1G067800.6	Barley	plastid	94.67	87.79
EES14795	Sorghum	plastid	78.37	78.12
Zm00001d049346_P001	Maize	plastid	74.92	74.22
VIT_09s0018g01880.t01	Wine grape	nucleus	65.2	69.57
GSMUA_Achr2P05000_001	Banana	cytosol	65.52	69.21
CDY37307	Canola	nucleus	45.77	68.87
GSMUA_Achr9P19610_001	Banana	cytosol	63.64	66.34
Bra023895.1-P	Field mustard	nucleus	63.32	66.01
KRH44644	Soybean	nucleus	63.95	64.35
Solyc03g123840.2.1	Tomato	nucleus	63.64	63.44
AT3G21215.1	Thale cress	nucleus	66.46	62.54
CDY27533	Canola	nucleus	65.52	60.93
PGSC0003DMT400023680	Potato	plastid	63.01	60.54
KRH47009	Soybean	nucleus	64.58	58.86
CDY06428	Canola	nucleus	42.95	44.34
TraesCS7D01G432900.1	Wheat	nucleus	26.65	26.81
TraesCS7D01G100500.1	Wheat	cytosol, mitochondrion, nucleus, peroxisome	23.2	24.92

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102
PANTHER:PTHR45381	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	EnsemblPlantsGene:TraesCS7D01G290200
EnsemblPlants:TraesCS7D01G290200.1	TIGR:cd12245	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr7D:-:339115272..339119583

Molecular Weight (calculated)

34139.0 Da

IEP (calculated)

8.651

GRAVY (calculated)

-0.236

Length

319 amino acids

Sequence
(BLAST)

001: MAGAGIHPFH QQWPPQAAVP APPAVPPPPP VPGAPDAAAR PGSDEVRTIF ITGLPVDVKE RELHNLLRWL PGFEASQINF KGDQPMGFAL FSYAHHAIAA
101: KAALQDLVFD AETKSALHIE MAKKNLFIKR GVGTDANAMD QSKRLRTGGD YTHSAYAPPP FHPPPPAVSM WGTAGYMAAP PPYNPYAGYP VPTVPMTSPS
201: PVPGPTAYAP VQNMKDNPPC NTLFIGNLGE TVVEEELRGL FSVQPGFKQM KVLRQDRNTV CFIEFDDVSA ASAVHHTLQG AIVPSSGRGG MRIQFSKNPF
301: GRRKDLVGGM VGTLNGAPV

Best Arabidopsis Sequence Match ( AT3G21215.2 )
(BLAST)

001: MAGAGIHPYH QQWPPAGAPP PPAAVSSAAP PHPPPIHHHP PPPPVLVDNH NRPPYDELRT IFIAGLPDDV KERELLNLLR WLPGYEASQV NFKGEKPMGF
101: ALFSTAQFAM AAKDTLQHMV FDAESKSVIH TEMAKKNLFV KRGIVGDSNA YDQSKRLRTG GDCTHSVYSP SPFHPPPPPV WGPPHGYMAP APPPYDPYAG
201: YHAPPVPMPT PPPIAAPSSY VPVQNIKDNP PCNTLFIGNL GENINEEELR SLLSAQPGFK QMKILRQERH TVCFIEFEDV NSATNVHHNL QGAVIPSSGS
301: IGMRIQYSKN PYGKRKEGGG YSFFPSPSAN GAQGALTYQ

Arabidopsis Description

AT3G21215 protein [Source:UniProtKB/TrEMBL;Acc:Q9ASW4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.