Factsheet for VIT_09s0018g01880.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_05s0020g00450.t01
VIT_05s0020g03470.t01
VIT_05s0029g00440.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G21215.1	VIT_05s0020g00450.t01	AT3G17310.1	21798944
AT3G21215.1	VIT_05s0020g03470.t01	AT3G22440.1	21798944
AT3G21215.1	VIT_05s0029g00440.t01	AT4G13850.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY37307	Canola	nucleus	59.2	83.49
Bra023895.1-P	Field mustard	nucleus	79.26	77.45
AT3G21215.1	Thale cress	nucleus	83.61	73.75
KRH44644	Soybean	nucleus	77.93	73.5
Solyc03g123840.2.1	Tomato	nucleus	78.26	73.12
PGSC0003DMT400023680	Potato	plastid	78.26	70.48
GSMUA_Achr2P05000_001	Banana	cytosol	70.9	70.2
CDY27533	Canola	nucleus	80.27	69.97
GSMUA_Achr9P19610_001	Banana	cytosol	69.9	68.3
KRH47009	Soybean	nucleus	77.93	66.57
TraesCS7A01G287800.1	Wheat	nucleus, plastid	70.23	65.83
Zm00001d049346_P001	Maize	plastid	70.23	65.22
TraesCS7D01G290200.1	Wheat	nucleus, plastid	69.57	65.2
TraesCS7B01G182400.1	Wheat	nucleus, plastid	68.9	64.58
EES14795	Sorghum	plastid	68.23	63.75
HORVU7Hr1G067800.6	Barley	plastid	69.57	60.47
CDY06428	Canola	nucleus	50.5	48.87
VIT_07s0031g00180.t01	Wine grape	nucleus, plastid	32.78	29.43
VIT_09s0002g02410.t01	Wine grape	nucleus	24.75	27.21

Protein Annotations

EntrezGene:100263943	wikigene:100263943	Gene3D:3.30.70.330	MapMan:35.2	ProteinID:CBI25280	ProteinID:CBI25280.3
UniProt:D7T448	EMBL:FN595513	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	EntrezGene:LOC100263943	wikigene:LOC100263943	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR45381	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI00015CACBF	ArrayExpress:VIT_09s0018g01880	EnsemblPlantsGene:VIT_09s0018g01880	EnsemblPlants:VIT_09s0018g01880.t01	RefSeq:XP_002273578
RefSeq:XP_002273578.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr9:+:19484892..19497260

Molecular Weight (calculated)

32602.7 Da

IEP (calculated)

6.585

GRAVY (calculated)

-0.457

Length

299 amino acids

Sequence
(BLAST)

001: MAGAGIHPYH QQWPPAPAPQ PSAPGAPPAP AHPPPILVEN PNRPNSDEVR TIFISGLPED VKERELQNLL RWLPGYEASQ VNFKGEHPMG FALFSTPQLA
101: VAAKDALQEM VFDAESKSVL HTEMAKKNLF VKRGIVADSS AYDQSKRLRT GGDYTHTGYS SPSPFHPPPA PVWGPHGYMA PAPPPYDPYG AYPVPPVPMP
201: APAPVPAPSS YVPVQNTKDN PPCNTLFIGN LGENINEEEL RGLFSVQPGF KQMKILRQER HTVCFIEFED MNTATNVHHS LQGAVIPSSG SVGMRIQYP

Best Arabidopsis Sequence Match ( AT3G21215.3 )
(BLAST)

001: MAGAGIHPYH QQWPPAGAPP PPAAVSSAAP PHPPPIHHHP PPPPVLVDNH NRPPYDELRT IFIAGLPDDV KERELLNLLR WLPGYEASQV NFKGEKPMGF
101: ALFSTAQFAM AAKDTLQHMV FDAESKSVIH TEMAKKNLFV KRGIVGDSNA YDQSKRLRTG GDCTHSVYSP SPFHPPPPPV WGPPHGYMAP APPPYDPYAG
201: YHAPPVPMPT PPPIAAPSSY VPVQNIKDNP PCNTLFIGNL GENINEEELR SLLSAQPGFK QMKILRQERH TVCFIEFEDV NSATNVHHNL QGAVIPSSGS
301: IGMRIQYPYI LLLFLII

Arabidopsis Description

AT3G21215 protein [Source:UniProtKB/TrEMBL;Acc:Q9ASW4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.