Factsheet for VIT_05s0020g00450.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH50633	Soybean	cytosol	45.79	46.97
Solyc05g053260.2.1	Tomato	cytosol	36.24	45.99
KRH02428	Soybean	nucleus	46.35	45.27
Os05t0133900-02	Rice	nucleus	37.5	39.26
KXG21224	Sorghum	cytosol	35.81	38.87
Zm00001d010928_P001	Maize	nucleus	35.67	38.54
TraesCS5D01G062400.2	Wheat	cytosol	34.97	38.49
TraesCS5B01G057300.1	Wheat	cytosol	34.83	38.33
HORVU5Hr1G012110.2	Barley	cytosol	34.41	37.93
CDX95858	Canola	cytosol	36.8	37.06
AT3G17310.1	Thale cress	cytosol	36.66	36.76
TraesCS4A01G495700.1	Wheat	cytosol	25.7	36.6
VIT_14s0066g01040.t01	Wine grape	cytosol	26.54	35.53
TraesCS5A01G051400.2	Wheat	nucleus	34.27	34.08
GSMUA_Achr10P...	Banana	cytosol	20.37	34.04
TraesCS7D01G003200.1	Wheat	nucleus	29.63	33.92
CDY13817	Canola	plastid	25.98	33.88
TraesCS7A01G002900.3	Wheat	plastid	29.63	33.87
HORVU7Hr1G000410.34	Barley	mitochondrion	27.81	33.45
CDX82030	Canola	endoplasmic reticulum	26.26	33.27
Bra031188.1-P	Field mustard	nucleus	25.0	31.12
Bra022208.1-P	Field mustard	plasma membrane, vacuole	38.62	30.69
CDX92125	Canola	plasma membrane, vacuole	37.5	30.2

Protein Annotations

KEGG:00270+2.1.1.37	EntrezGene:100247823	wikigene:100247823	Gene3D:3.40.50.150	MapMan:35.1	InterPro:C5_MeTfrase
ProteinID:CCB50273	ProteinID:CCB50273.1	UniProt:F6HE15	EMBL:FN595749	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006306	GO:GO:0008150	GO:GO:0008152
GO:GO:0008168	GO:GO:0009987	GO:GO:0016740	InterPro:IPR001525	InterPro:IPR030380	EntrezGene:LOC100247823
wikigene:LOC100247823	PFAM:PF00145	PFscan:PS51680	PANTHER:PTHR23068	PANTHER:PTHR23068:SF11	InterPro:SAM-dependent_MTases
InterPro:SAM_MeTfrase_DRM	SUPFAM:SSF53335	TIGR:TC52080	UniParc:UPI000198336F	ArrayExpress:VIT_05s0020g00450	EnsemblPlantsGene:VIT_05s0020g00450
EnsemblPlants:VIT_05s0020g00450.t01	unigene:Vvi.5552	RefSeq:XP_002264226	RefSeq:XP_002264226.1	SEG:seg	:

Description

No Description!

Coordinates

chr5:-:2361509..2376608

Molecular Weight (calculated)

79800.6 Da

IEP (calculated)

5.813

GRAVY (calculated)

-0.441

Length

712 amino acids

Sequence
(BLAST)

001: MGEIADYSDS KSSSETVGER GTMIKVEPLE LNLPTENMCA RHIGHNGASS SGSKLRSSFI GMGFLPSLVD KVIEEKGEDD VDLLLETLCA NAALQKSISE
101: SSDSLDSFLN DEDTNNPPKF SAGFHPKEEP DVSSGVNDDK RATLVMMKFS VDEVEFAMDK LGEGAPVNEL VDFIIAAQIA GSSKMDADDP TYGNEERKED
201: CNNEALFGTM DKTLRLLEMG FSENEISSAI EKFGSEVPIS ELADSIFAGQ IAEKDKHSSA TFRLNHSHTG NDYRSFGKGM EDGLKRRSSG TFMVKTEEYS
301: PEAVSQLRAV DIGDDHKGKR PKQESLDDSS AYIGPTWLEG RKGDHKFSSC RMPLPRRDLN QVAGQLNKFG MSSISKPMPC KSLDQLVAKP PYFFYGNVTN
401: VSHDSWNKIS QFLYALEPEF VNTQFFSALN RKEGYIHNLP SENRFHILPK PPMTIEEVIP YTKKWWPSWD TRKQLSCISS ETSGISQLCD RLGKILVDSR
501: GLLSFEQQRD ILHHCRTLNL VWVGQCKLSP IEPEHLERIL GYPLNHTRVP EYSLIERLQS LRHCFQIDTL GYHLSVLKSM FPKGLTMLSL FSGIGGAELT
601: LHQLGIHLKG VVSVEISETK RNILKKWWHN TGQTGELVQI DDIQKLASSK LESLIEKFGG FDFVICQNPC TYSSRNSKMV ADGDSLTGFD FSLFCEFVRV
701: LHRVRSTMER RR

Best Arabidopsis Sequence Match ( AT3G17310.2 )
(BLAST)

001: MADMRRRNGS GGSSNHERNE QILFPKPETL DFDLPCDTSF PQQIGDNAAS SSGSNVKSLL IEMGFCPTLV QKAIDENGQD DFELLLEILT KSTETEPPGP
101: SFHGLMEPKP EPDIEYETDR IRIALLTMKF PENLVDFALD RLGKDTPIDE MVDFIVAAQL AEKYAEESED SLDGAEINEE DEDVTPVTAR GPEVPNEQLF
201: ETMDKTLRLL EMGFSNDEIS MAIEKIGTKG QISVLAESIV TGEFPAECHD DLEDIEKKVS AAAPAVNRTC LSKSWRFVGV GAQKEDGGGG SSSGTANIKP
301: DPGIESFPFP ATDNVGETSR GKRPKDEDEN AYPEEYTGYD DRGKRLRPED MGDSSSFMET PWMQDEWKDN TYEFPSVMQP RLSQSLGPKV ARRPYFFYGQ
401: LGELSPSWWS KISGFLFGIH PEHVDTRLCS ALRRTEGYLH NLPTVNRFNT LPNPRLTIQD AMPHMRSWWP QWDIRKHFNS GTCSNMKDAT LLCERIGRRI
501: AECKGKPTQQ DQTLILRHCH TSNLIWIAPN ILSPLEPEHL ECIMGYPMNH TNIGGGRLAE RLKLFDYCFQ TDTLGYHLSV LKSMFPQGLT VLSLFSGIGG
601: AEIALDRLGI HLKGVVSVES CGLSRNILKR WWQTSGQTGE LVQIEEIKSL TAKRLETLMQ RFGGFDFVIC QNPSTPLDLS KEISNSEACE FDYTLFNEFA
701: RVTKRVRDMM

Arabidopsis Description

DRM3Probable inactive DNA (cytosine-5)-methyltransferase DRM3 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1E8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.