CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 1
endoplasmic reticulum 4
extracellular 3
vacuole 3
plasma membrane 3
golgi 3
nucleus 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	nucleus, peroxisome, plastid, secretory
BaCelLo:	plastid
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY13817	Canola	plastid	64.06	65.93
CDX95858	Canola	cytosol	42.53	33.8
CDX92125	Canola	plasma membrane, vacuole	43.59	27.71
GSMUA_Achr10P...	Banana	cytosol	21.0	27.7
TraesCS4A01G495700.1	Wheat	cytosol	24.38	27.4
VIT_05s0020g00450.t01	Wine grape	nucleus	33.27	26.26
KRH50633	Soybean	cytosol	31.14	25.22
CDY09872	Canola	nucleus	24.38	24.64
CDX69571	Canola	nucleus	24.38	24.64
TraesCS5D01G062400.2	Wheat	cytosol	27.58	23.96
TraesCS5B01G057300.1	Wheat	cytosol	27.4	23.8
KRH02428	Soybean	nucleus	30.61	23.59
HORVU7Hr1G000410.34	Barley	mitochondrion	24.73	23.48
CDX91035	Canola	cytosol	22.95	23.24
HORVU5Hr1G012110.2	Barley	cytosol	26.69	23.22
CDX85590	Canola	cytosol	22.6	22.76
CDX85589	Canola	nucleus	17.97	22.7
TraesCS7D01G003200.1	Wheat	nucleus	24.91	22.51
CDY40934	Canola	nucleus	17.26	22.4
Os05t0133900-02	Rice	nucleus	26.87	22.21
TraesCS7A01G002900.3	Wheat	plastid	24.56	22.15
Zm00001d010928_P001	Maize	nucleus	25.44	21.7
KXG21224	Sorghum	cytosol	25.09	21.49
TraesCS5A01G051400.2	Wheat	nucleus	27.05	21.23
CDY40933	Canola	cytosol	23.84	21.07
Solyc05g053260.2.1	Tomato	cytosol	18.68	18.72
CDX95928	Canola	golgi	24.91	14.89

Protein Annotations

EnsemblPlants:CDX82030	EnsemblPlantsGene:GSBRNA2T00137011001	Gene3D:3.40.50.150	GO:A0A078CZ18	GO:GO:0006139	GO:GO:0006259
GO:GO:0006306	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	InterPro:IPR030380	InterPro:SAM-dependent_MTases
InterPro:SAM_MeTfrase_DRM	KEGG:00270+2.1.1.37	PANTHER:PTHR23068	PANTHER:PTHR23068:SF11	PFscan:PS51680	ProteinID:CDX82030
ProteinID:CDX82030.1	SEG:seg	SUPFAM:SSF53335	UniParc:UPI0004EE3FB8	MapMan:35.1	:

Description

BnaC08g35710D

Coordinates

chrLK031826:+:1959324..1962353

Molecular Weight (calculated)

62752.8 Da

IEP (calculated)

6.915

GRAVY (calculated)

-0.419

Length

562 amino acids

Sequence
(BLAST)

001: MIYDFNEIIY FHKFYFLLFY YLINFRERVI KAIVPSQTGK EENRRHKARS LCVRVFIITM ADLRRRNGGG GGGGSHSSNR DKHDSLFPKP DTHIGDNAAA
101: LPPVSNVKSK LIEMGFSSSL VHKKIDENGI HKGVQMDEMI DFLVAAQLDD KYAEDSQDNG SDTNRGENDV VVVLPAEVPS ELPLDKTSQL LEMGFSRHEI
201: STAIEKLGEE AQIADLAESI IIGEVPADNL EDIEKKVSTT RACPSNSWRF VAQENEGSSR GTATKVSKRI KDEDADDFDN RGKRLRPALE TPRMQQDSAM
301: QPPLSQHKRP YVFYGNIGEL SPKEWSKISS FFFGIQPEHV DTRLCSTLSR KEGYMHNLPV ENRFHILPKP TRSAPPPPPP SIISSPENLE CIMGYPPNHT
401: DIGGGGGGAR LKLLDYCFQT DALGYHLSVL KPMFPQGLRV LSLFSGIGGA EIALSRLGIH LRSVCSVEPC GLSRSVLKRW WRSSGQSGEL EQIEDIRSLR
501: TKRLEALVER FGGFDLVICQ NPPTPTDLSR ESSRSGACEF DFTLFNQVVR VSKLVRGLME SI

Best Arabidopsis Sequence Match ( AT3G17310.2 )
(BLAST)

001: MADMRRRNGS GGSSNHERNE QILFPKPETL DFDLPCDTSF PQQIGDNAAS SSGSNVKSLL IEMGFCPTLV QKAIDENGQD DFELLLEILT KSTETEPPGP
101: SFHGLMEPKP EPDIEYETDR IRIALLTMKF PENLVDFALD RLGKDTPIDE MVDFIVAAQL AEKYAEESED SLDGAEINEE DEDVTPVTAR GPEVPNEQLF
201: ETMDKTLRLL EMGFSNDEIS MAIEKIGTKG QISVLAESIV TGEFPAECHD DLEDIEKKVS AAAPAVNRTC LSKSWRFVGV GAQKEDGGGG SSSGTANIKP
301: DPGIESFPFP ATDNVGETSR GKRPKDEDEN AYPEEYTGYD DRGKRLRPED MGDSSSFMET PWMQDEWKDN TYEFPSVMQP RLSQSLGPKV ARRPYFFYGQ
401: LGELSPSWWS KISGFLFGIH PEHVDTRLCS ALRRTEGYLH NLPTVNRFNT LPNPRLTIQD AMPHMRSWWP QWDIRKHFNS GTCSNMKDAT LLCERIGRRI
501: AECKGKPTQQ DQTLILRHCH TSNLIWIAPN ILSPLEPEHL ECIMGYPMNH TNIGGGRLAE RLKLFDYCFQ TDTLGYHLSV LKSMFPQGLT VLSLFSGIGG
601: AEIALDRLGI HLKGVVSVES CGLSRNILKR WWQTSGQTGE LVQIEEIKSL TAKRLETLMQ RFGGFDFVIC QNPSTPLDLS KEISNSEACE FDYTLFNEFA
701: RVTKRVRDMM

Arabidopsis Description

DRM3Probable inactive DNA (cytosine-5)-methyltransferase DRM3 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1E8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.