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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • cytosol 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX68112
CDX70287
CDX73212
CDX77061
CDX80214
CDX80590
CDX81933
CDX82696
CDX85931
CDX87650
CDX92100
CDX92405
CDX92406
CDX95900
CDY03358
CDY04475
CDY09103
CDY10359
CDY13521
CDY16595
CDY21661
CDY28102
CDY29763
CDY31584
CDY35867
CDY39073
CDY48192
CDY48711
CDY50502
CDY50960
CDY56413
CDY59516
CDY62055
CDY67912
CDY70287

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G14620.1 CDY28102 AT1G49590.1 23524848
AT5G14620.1 CDY50960 AT1G49590.1 23524848
AT5G14620.1 CDX68112 AT1G75950.1 24855943
AT5G14620.1 CDX73212 AT1G75950.1 24855943
AT5G14620.1 CDX80590 AT1G75950.1 24855943
AT5G14620.1 CDX85931 AT1G75950.1 24855943
AT5G14620.1 CDX87650 AT1G75950.1 24855943
AT5G14620.1 CDY13521 AT1G75950.1 24855943
AT5G14620.1 CDY39073 AT1G75950.1 24855943
AT5G14620.1 CDX81933 AT2G19520.1 24855943
AT5G14620.1 CDX82696 AT2G19520.1 24855943
AT5G14620.1 CDY03358 AT2G19520.1 24855943
AT5G14620.1 CDY21661 AT2G19520.1 24855943
AT5G14620.1 CDY29763 AT2G19520.1 24855943
AT5G14620.1 CDY35867 AT2G19520.1 24855943
AT5G14620.1 CDY48711 AT2G19520.1 24855943
AT5G14620.1 CDY70287 AT2G19520.1 24855943
AT5G14620.1 CDX77061 AT2G27040.1 24855943
AT5G14620.1 CDY04475 AT2G27040.1 24855943
AT5G14620.1 CDY48192 AT2G27040.1 24855943
AT5G14620.1 CDY56413 AT2G27040.1 24855943
AT5G14620.1 CDY62055 AT2G27040.1 24855943
AT5G14620.1 CDX92100 AT3G16830.1 24855943
AT5G14620.1 CDX95900 AT3G16830.1 24855943
AT5G14620.1 CDY50502 AT3G16830.1 24855943
AT5G14620.1 CDY67912 AT3G16830.1 24855943
AT5G14620.1 CDX80214 AT3G45980.1 24855943
AT5G14620.1 CDY31584 AT3G45980.1 24855943
AT5G14620.1 CDX70287 AT5G03740.1 24855943
AT5G14620.1 CDY10359 AT5G03740.1 24855943
AT5G14620.1 CDX92405 AT5G21150.1 24855943
AT5G14620.1 CDX92406 AT5G21150.1 24855943
AT5G14620.1 CDY09103 AT5G21150.1 24855943
AT5G14620.1 CDY16595 AT5G21150.1 24855943
AT5G14620.1 CDY59516 AT5G21150.1 24855943
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX69571 Canola nucleus 87.77 87.77
HORVU4Hr1G017920.1 Barley cytosol 10.61 72.84
CDX91035 Canola cytosol 67.81 67.93
Os11t0109200-00 Rice plastid 19.96 66.47
CDX85590 Canola cytosol 66.55 66.31
CDX85589 Canola nucleus 49.82 62.25
TraesCS6A01G124200.1 Wheat peroxisome 23.74 61.68
AT5G14620.1 Thale cress nucleus 69.42 61.66
TraesCSU01G224900.1 Wheat peroxisome 40.29 59.73
CDY40934 Canola nucleus 44.06 56.58
HORVU3Hr1G098990.3 Barley cytosol, nucleus 45.32 55.38
TraesCS3D01G454900.1 Wheat peroxisome 44.42 54.77
Zm00001d044187_P001 Maize cytosol 23.74 53.88
TraesCS3A01G461200.1 Wheat cytosol, nucleus, peroxisome 44.96 51.23
CDY40933 Canola cytosol 57.37 50.16
KRH69576 Soybean nucleus 46.58 48.23
HORVU0Hr1G018360.1 Barley cytosol, peroxisome 37.23 47.7
HORVU3Hr1G098970.1 Barley nucleus 43.17 47.34
Os03t0110800-01 Rice nucleus 50.72 47.24
HORVU6Hr1G081790.1 Barley nucleus 45.86 47.22
TraesCS3A01G461300.1 Wheat cytosol, nucleus, peroxisome 43.7 45.59
TraesCS5A01G241800.1 Wheat nucleus 49.64 44.66
TraesCS5D01G248300.1 Wheat nucleus 49.28 44.34
EER95283 Sorghum nucleus 45.86 44.27
Zm00001d048516_P001 Maize nucleus 47.3 43.62
GSMUA_Achr8P33680_001 Banana cytosol 39.75 43.42
TraesCS4A01G267400.1 Wheat nucleus 33.27 43.22
TraesCS4B01G012300.2 Wheat cytosol 24.64 43.08
TraesCS6A01G338800.1 Wheat nucleus 46.76 42.98
TraesCSU01G124200.1 Wheat nucleus 46.58 42.95
TraesCS6D01G319500.2 Wheat nucleus 46.58 42.81
TraesCS5A01G553300.3 Wheat nucleus 46.94 42.79
TraesCS4D01G046800.1 Wheat nucleus 46.22 42.76
Os12t0108900-00 Rice cytosol, nucleus 27.16 42.42
OQU93413 Sorghum nucleus 46.22 42.34
EES00541 Sorghum nucleus 46.22 42.27
TraesCSU01G140500.1 Wheat nucleus 45.68 42.26
HORVU4Hr1G089730.3 Barley nucleus 26.98 42.02
GSMUA_Achr11P... Banana nucleus 34.53 41.65
TraesCSU01G140600.1 Wheat nucleus 45.68 40.97
OQU87185 Sorghum cytosol 17.09 40.25
TraesCS6A01G163300.1 Wheat cytosol, nucleus, peroxisome 41.37 39.79
TraesCS6D01G147500.2 Wheat cytosol, nucleus, peroxisome 41.55 39.69
TraesCS3A01G461500.1 Wheat nucleus 45.14 39.1
GSMUA_Achr3P23940_001 Banana nucleus 42.09 38.94
HORVU6Hr1G032260.8 Barley nucleus, peroxisome 40.29 38.03
Zm00001d027329_P002 Maize nucleus 46.58 36.63
CDX95928 Canola golgi 58.63 34.68
TraesCS3A01G067600.1 Wheat nucleus 43.7 32.02
TraesCS6D01G114500.1 Wheat mitochondrion 26.62 31.03
HORVU7Hr1G000490.1 Barley cytosol 1.62 28.12
CDX82030 Canola endoplasmic reticulum 24.64 24.38
CDY13817 Canola plastid 23.56 23.99
CDX95858 Canola cytosol 28.78 22.63
CDX92125 Canola plasma membrane, vacuole 29.5 18.55
Protein Annotations
KEGG:00270+2.1.1.37Gene3D:1.10.8.10MapMan:12.5.1.11Gene3D:3.40.50.150GO:A0A078F9X8UniProt:A0A078F9X8
InterPro:C5_MeTfraseEnsemblPlants:CDY09872ProteinID:CDY09872ProteinID:CDY09872.1GO:GO:0003674GO:GO:0003824
GO:GO:0005488GO:GO:0005515GO:GO:0006139GO:GO:0006259GO:GO:0006306GO:GO:0008150
GO:GO:0008152GO:GO:0008168GO:GO:0009987GO:GO:0016740EnsemblPlantsGene:GSBRNA2T00031623001InterPro:IPR001525
InterPro:IPR015940InterPro:IPR030380PFAM:PF00145PFscan:PS50030PFscan:PS51680PANTHER:PTHR23068
PANTHER:PTHR23068:SF3InterPro:SAM-dependent_MTasesInterPro:SAM_MeTfrase_DRMInterPro:SANT/MybSUPFAM:SSF46934SUPFAM:SSF53335
InterPro:UBAInterPro:UBA-like_sfUniParc:UPI0004EEAC05SEG:seg::
Description
BnaC09g42890DBnaC09g42890D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F9X8]
Coordinates
chrLK031999:-:739077..743202
Molecular Weight (calculated)
62090.5 Da
IEP (calculated)
5.036
GRAVY (calculated)
-0.432
Length
556 amino acids
Sequence
(BLAST)
001: MGFSPENIAR AIDEHGPNAD TVVIIDAISK YTVNCEASSS KSKTIDHFLA MGFEEEKVIK AIHEHGEDNI EEIANALISS AADASPVIKE EEDIEWSESD
101: DEKYANFLSS DDEKVSDSSS ENGNQLRSLM NMGFSELEAS LAIQRCGTGE DVSIADLADF ICAAQIAREF DEFHADPEEQ KPNVKKRRIE PRREPRSSAA
201: DDEPLRLPNP MIGFGVPNEP GLIAQRSLPA MARMPPFFYY ENVALAPKGV WDTISSHLYD VPPEFVDSKY ICAAARKRGY VHNLPISGRY QVQPPPKYTI
301: SEAFPLTKKW WPEWDKRTKL NCILTVNASA QLTNRIRLAL EPYSGEPPES KKKYVIEQCK KWNLVWVGKN KAAPLEPDEM ETLLGFPRNH TRGGGMSRTE
401: RLKSLGNSFQ VDTVAYHLSV LKPLFPYGIN VLSLFTGIGG GEVALHRLQI PMKTVVSVEI SAGNRNILKD FWEQTNQKGT LIEFADVQDL SNEKIVELMK
501: QFGGFDLVIG GSPCNNLAGG NRVSRSGLEG DQSCLFYEYC RILDVVRETT KTMRRS
Best Arabidopsis Sequence Match ( AT5G14620.1 )
(BLAST)
001: MVIWNNDDDD FLEIDNFQSS PRSSPIHAMQ CRVENLAGVA VTTSSLSSPT ETTDLVQMGF SDEVFATLFD MGFPVEMISR AIKETGPNVE TSVIIDTISK
101: YSSDCEAGSS KSKAIDHFLA MGFDEEKVVK AIQEHGEDNM EAIANALLSC PEAKKLPAAV EEEDGIDWSS SDDDTNYTDM LNSDDEKDPN SNENGSKIRS
201: LVKMGFSELE ASLAVERCGE NVDIAELTDF LCAAQMAREF SEFYTEHEEQ KPRHNIKKRR FESKGEPRSS VDDEPIRLPN PMIGFGVPNE PGLITHRSLP
301: ELARGPPFFY YENVALTPKG VWETISRHLF EIPPEFVDSK YFCVAARKRG YIHNLPINNR FQIQPPPKYT IHDAFPLSKR WWPEWDKRTK LNCILTCTGS
401: AQLTNRIRVA LEPYNEEPEP PKHVQRYVID QCKKWNLVWV GKNKAAPLEP DEMESILGFP KNHTRGGGMS RTERFKSLGN SFQVDTVAYH LSVLKPIFPH
501: GINVLSLFTG IGGGEVALHR LQIKMKLVVS VEISKVNRNI LKDFWEQTNQ TGELIEFSDI QHLTNDTIEG LMEKYGGFDL VIGGSPCNNL AGGNRVSRVG
601: LEGDQSSLFF EYCRILEVVR ARMRGS
Arabidopsis Description
DRM2DNA (cytosine-5)-methyltransferase DRM2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M548]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.