CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 2
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER89414
EER96770
EER97675
EES00304
EES00305
EES00399
EES00570
EES01357
EES03855
EES07386
EES15092
EES15460
EES18353
EES18816
KXG32191
OQU86696
OQU87075
OQU92807

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G14620.1	EER89414	AT1G49590.1	23524848
AT5G14620.1	EES01357	AT2G19520.1	24855943
AT5G14620.1	EES00570	AT2G27040.1	24855943
AT5G14620.1	EES18816	AT2G27040.1	24855943
AT5G14620.1	OQU86696	AT2G27040.1	24855943
AT5G14620.1	KXG32191	AT3G16830.1	24855943
AT5G14620.1	EER96770	AT3G45980.1	24855943
AT5G14620.1	EER97675	AT3G45980.1	24855943
AT5G14620.1	EES00304	AT3G45980.1	24855943
AT5G14620.1	EES00305	AT3G45980.1	24855943
AT5G14620.1	EES00399	AT3G45980.1	24855943
AT5G14620.1	EES03855	AT3G45980.1	24855943
AT5G14620.1	EES07386	AT3G45980.1	24855943
AT5G14620.1	EES15092	AT3G45980.1	24855943
AT5G14620.1	EES15460	AT3G45980.1	24855943
AT5G14620.1	EES18353	AT3G45980.1	24855943
AT5G14620.1	OQU87075	AT3G45980.1	24855943
AT5G14620.1	OQU92807	AT3G45980.1	24855943
AT5G14620.1	EES00570	AT5G21150.1	24855943
AT5G14620.1	EES18816	AT5G21150.1	24855943
AT5G14620.1	OQU86696	AT5G21150.1	24855943

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os11t0109200-00	Rice	plastid	21.88	75.45
PGSC0003DMT400040081	Potato	mitochondrion	25.17	70.39
HORVU4Hr1G017920.1	Barley	cytosol	9.9	70.37
TraesCS4B01G388300.1	Wheat	cytosol	23.61	68.34
TraesCSU01G224900.1	Wheat	peroxisome	44.1	67.73
TraesCS6A01G124200.1	Wheat	peroxisome	24.31	65.42
TraesCS3D01G454900.1	Wheat	peroxisome	51.04	65.19
HORVU3Hr1G098990.3	Barley	cytosol, nucleus	51.39	65.05
TraesCS3B01G503900.1	Wheat	peroxisome	50.69	64.75
TraesCS3A01G461200.1	Wheat	cytosol, nucleus, peroxisome	53.47	63.11
EES00541	Sorghum	nucleus	65.8	62.34
TraesCS5B01G239800.1	Wheat	nucleus	64.06	62.12
Os03t0110800-01	Rice	nucleus	63.72	61.47
OQU93413	Sorghum	nucleus	64.41	61.12
TraesCS5D01G248300.1	Wheat	nucleus	64.41	60.03
TraesCS5A01G241800.1	Wheat	nucleus	64.41	60.03
HORVU6Hr1G081790.1	Barley	nucleus	56.25	60.0
HORVU0Hr1G018360.1	Barley	cytosol, peroxisome	44.27	58.76
TraesCS6B01G369700.1	Wheat	nucleus	61.63	58.68
TraesCS6A01G338800.1	Wheat	nucleus	61.11	58.18
TraesCS6D01G319500.2	Wheat	nucleus	60.76	57.85
TraesCS4B01G390500.4	Wheat	nucleus	59.55	57.07
TraesCS3A01G461300.1	Wheat	cytosol, nucleus, peroxisome	52.43	56.66
TraesCSU01G140500.1	Wheat	nucleus	59.03	56.57
TraesCS3B01G504000.1	Wheat	nucleus	52.26	56.37
HORVU3Hr1G098970.1	Barley	nucleus	49.31	56.02
TraesCS4B01G388900.2	Wheat	nucleus	58.33	55.72
TraesCS4B01G334900.1	Wheat	nucleus	58.16	55.56
TraesCSU01G124200.1	Wheat	nucleus	58.16	55.56
TraesCS5A01G553300.3	Wheat	nucleus	58.51	55.25
TraesCS6A01G163300.1	Wheat	cytosol, nucleus, peroxisome	55.03	54.84
TraesCSU01G140600.1	Wheat	nucleus	58.68	54.52
TraesCS4D01G046800.1	Wheat	nucleus	56.08	53.74
TraesCS6D01G147500.2	Wheat	cytosol, nucleus, peroxisome	54.17	53.61
OQU87185	Sorghum	cytosol	21.88	53.39
Os12t0108900-00	Rice	cytosol, nucleus	32.99	53.37
TraesCS4B01G047000.1	Wheat	nucleus	55.73	53.32
TraesCS4A01G267400.1	Wheat	nucleus	39.58	53.27
TraesCS6B01G186600.1	Wheat	nucleus	52.08	52.54
HORVU4Hr1G089730.3	Barley	nucleus	31.94	51.54
HORVU6Hr1G032260.8	Barley	nucleus, peroxisome	52.08	50.93
TraesCS6B01G107600.1	Wheat	nucleus	54.86	50.64
TraesCS3A01G461500.1	Wheat	nucleus	55.21	49.53
TraesCS3B01G504200.1	Wheat	nucleus	51.91	49.18
VIT_14s0066g01040.t01	Wine grape	cytosol	44.1	47.74
KRG93258	Soybean	nucleus	47.4	47.07
Bra023480.1-P	Field mustard	cytosol	36.28	46.97
CDX85589	Canola	nucleus	36.11	46.74
KRH69576	Soybean	nucleus	43.23	46.37
CDY40934	Canola	nucleus	34.55	45.96
KRH56579	Soybean	nucleus	47.05	45.93
CDX69571	Canola	nucleus	44.27	45.86
CDY09872	Canola	nucleus	44.27	45.86
KRG93790	Soybean	cytosol	7.64	45.83
Solyc10g078190.1.1	Tomato	nucleus	48.44	45.81
Solyc02g062740.2.1	Tomato	nucleus	47.92	45.77
PGSC0003DMT400018502	Potato	nucleus	47.92	45.32
CDX85590	Canola	cytosol	43.58	44.98
PGSC0003DMT400004867	Potato	nucleus	47.4	44.98
GSMUA_Achr8P33680_001	Banana	cytosol	39.41	44.6
CDX91035	Canola	cytosol	42.71	44.32
Solyc04g005250.2.1	Tomato	nucleus	46.35	43.99
Bra008749.1-P	Field mustard	nucleus	45.31	43.43
GSMUA_Achr11P...	Banana	nucleus	34.03	42.52
GSMUA_Achr3P23940_001	Banana	nucleus	43.58	41.76
AT5G14620.1	Thale cress	nucleus	44.79	41.21
TraesCS3A01G067600.1	Wheat	nucleus	53.65	40.71
AT5G15380.1	Thale cress	cytoskeleton, cytosol, nucleus	43.92	40.54
CDY40933	Canola	cytosol	43.75	39.62
TraesCS6D01G114500.1	Wheat	mitochondrion	32.64	39.41
TraesCS6B01G152200.1	Wheat	mitochondrion	32.47	39.12
Bra023479.1-P	Field mustard	cytosol	22.22	38.44
Bra004388.1-P	Field mustard	cytosol	42.36	29.98
CDX95928	Canola	golgi	43.4	26.6
KXG21224	Sorghum	cytosol	27.6	24.24

Protein Annotations

KEGG:00270+2.1.1.37	Gene3D:1.10.8.10	MapMan:12.5.1.11	Gene3D:3.40.50.150	EntrezGene:8054199	UniProt:C5WSU3
InterPro:C5_MeTfrase	EnsemblPlants:EER95283	ProteinID:EER95283	ProteinID:EER95283.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006259	GO:GO:0006306	GO:GO:0008150
GO:GO:0008152	GO:GO:0008168	GO:GO:0009987	GO:GO:0016740	InterPro:IPR001525	InterPro:IPR015940
InterPro:IPR030380	PFAM:PF00145	PFAM:PF00627	PFscan:PS50030	PFscan:PS51680	PANTHER:PTHR23068
PANTHER:PTHR23068:SF3	InterPro:SAM-dependent_MTases	InterPro:SAM_MeTfrase_DRM	EnsemblPlantsGene:SORBI_3001G458100	SUPFAM:SSF46934	SUPFAM:SSF53335
InterPro:UBA	InterPro:UBA-like_sf	UniParc:UPI0001A833FC	RefSeq:XP_002468285.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr1:-:73442511..73448221

Molecular Weight (calculated)

63778.4 Da

IEP (calculated)

5.871

GRAVY (calculated)

-0.436

Length

576 amino acids

Sequence
(BLAST)

001: MADRVGGSDD GDKSEWNSDG EVARSLDGAG SPIAPSRNKL KDAPGPSLLV NGAGPSASLV EDFVGMGLIK GNGDGGAESL LELLLAYKAI GNDPSLDKSS
101: ASVCGPRTIC DDKDILANWD AHDASTSSDR DHASDDSGDE DFLQGLSQKD EKIESLVRMG FPKDEAEMAI VRCGQDAPMS VLIDLIYSSE ASEDGYYGNF
201: SGHEDDSFGG RKEKRKRSED AEQGSSHDEP MPLPNPMVGF NLPNVSLRSV DRSLPSKAIG PPFFYYENVA IAPKGVWTTI SQFLYDIQPE FVDSRFLCAA
301: ARKRGYVHNL PIENRSPLLP LPPKTIFEAF PHTKKWWPSW DPRKQFNCLL TSMAKPKLTE QIHHALAKCK DPPPRRVQKY VLETCRTANL VWVGLNKVAH
401: LEPDEMEFLL GFPKDHTRGI GRPERFKSLG NSFHVDTVAY HLSALRDMFP HGMNVLSLFS GIGGAEVALH RLDIRMKTVV SVEISETNRF VLRTWWNQTQ
501: TGTLIEITDV QSLTTERLES CIRRIGGFDL VIGGSPCNNL AGRNRFHRDG LEGEQSSLFY HYYRILDTVK SIMGRM

Best Arabidopsis Sequence Match ( AT5G14620.1 )
(BLAST)

001: MVIWNNDDDD FLEIDNFQSS PRSSPIHAMQ CRVENLAGVA VTTSSLSSPT ETTDLVQMGF SDEVFATLFD MGFPVEMISR AIKETGPNVE TSVIIDTISK
101: YSSDCEAGSS KSKAIDHFLA MGFDEEKVVK AIQEHGEDNM EAIANALLSC PEAKKLPAAV EEEDGIDWSS SDDDTNYTDM LNSDDEKDPN SNENGSKIRS
201: LVKMGFSELE ASLAVERCGE NVDIAELTDF LCAAQMAREF SEFYTEHEEQ KPRHNIKKRR FESKGEPRSS VDDEPIRLPN PMIGFGVPNE PGLITHRSLP
301: ELARGPPFFY YENVALTPKG VWETISRHLF EIPPEFVDSK YFCVAARKRG YIHNLPINNR FQIQPPPKYT IHDAFPLSKR WWPEWDKRTK LNCILTCTGS
401: AQLTNRIRVA LEPYNEEPEP PKHVQRYVID QCKKWNLVWV GKNKAAPLEP DEMESILGFP KNHTRGGGMS RTERFKSLGN SFQVDTVAYH LSVLKPIFPH
501: GINVLSLFTG IGGGEVALHR LQIKMKLVVS VEISKVNRNI LKDFWEQTNQ TGELIEFSDI QHLTNDTIEG LMEKYGGFDL VIGGSPCNNL AGGNRVSRVG
601: LEGDQSSLFF EYCRILEVVR ARMRGS

Arabidopsis Description

DRM2DNA (cytosine-5)-methyltransferase DRM2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M548]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.