CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES00399	Sorghum	nucleus	91.61	94.67
EES00304	Sorghum	nucleus	90.97	94.63
EES15460	Sorghum	nucleus	92.26	94.08
EES00305	Sorghum	nucleus	90.32	93.96
EES03855	Sorghum	nucleus	82.58	93.43
EES15092	Sorghum	nucleus	90.97	93.38
EER96770	Sorghum	nucleus	91.61	92.81
EER97675	Sorghum	nucleus	90.32	92.72
Zm00001d051591_P001	Maize	plastid	91.61	92.21
OQU92807	Sorghum	nucleus	87.74	91.89
GSMUA_Achr9P04060_001	Banana	nucleus	69.03	91.45
OQU87075	Sorghum	nucleus	89.03	90.2
KRH26542	Soybean	nucleus	74.84	86.57
KRH22818	Soybean	nucleus	74.19	86.47
PGSC0003DMT400077939	Potato	nucleus	81.29	86.3
EES18353	Sorghum	nucleus	81.29	85.71
Solyc06g075800.1.1	Tomato	nucleus	80.65	85.62
Bra007018.1-P	Field mustard	nucleus	76.13	85.51
KRH67549	Soybean	nucleus	76.13	85.51
KRG95819	Soybean	nucleus	76.13	85.51
AT2G37470.1	Thale cress	nucleus	76.13	85.51
KRH34681	Soybean	nucleus	75.48	85.4
KRG92106	Soybean	nucleus	74.84	85.29
PGSC0003DMT400043578	Potato	nucleus	77.42	85.11
KRH19721	Soybean	nucleus	76.13	84.89
AT3G46030.1	Thale cress	nucleus	79.35	84.83
Bra039810.1-P	Field mustard	nucleus	75.48	84.78
Solyc03g071620.1.1	Tomato	nucleus	76.77	84.4
Bra003150.1-P	Field mustard	nucleus	74.84	84.06
Bra002520.1-P	Field mustard	nucleus	81.29	84.0
Bra038267.1-P	Field mustard	nucleus	74.19	83.94
KRH29833	Soybean	nucleus	77.42	83.92
KRH29836	Soybean	nucleus	80.0	83.78
KRH29832	Soybean	nucleus	80.0	83.78
KRH29831	Soybean	nucleus	80.0	83.78
VIT_06s0004g04250.t01	Wine grape	nucleus	80.0	83.78
Bra006685.1-P	Field mustard	nucleus	76.13	83.69
AT5G59910.1	Thale cress	nucleus	80.65	83.33
AT5G02570.1	Thale cress	nucleus	70.97	83.33
AT3G53650.1	Thale cress	nucleus	74.19	83.33
AT3G45980.1	Thale cress	nucleus	80.65	83.33
KRH24831	Soybean	nucleus	80.0	83.22
KRH24833	Soybean	nucleus	80.0	83.22
PGSC0003DMT400070383	Potato	nucleus	76.13	83.1
Solyc06g005390.1.1	Tomato	nucleus	78.71	82.99
PGSC0003DMT400074994	Potato	nucleus	78.71	82.99
VIT_06s0004g04230.t01	Wine grape	nucleus	78.06	82.88
KRH24830	Soybean	nucleus	79.35	82.55
Bra020275.1-P	Field mustard	nucleus	75.48	82.39
Bra002436.1-P	Field mustard	nucleus	74.84	82.27
Solyc11g066430.1.1	Tomato	nucleus	74.19	82.14
AT2G28720.1	Thale cress	nucleus	80.0	82.12
VIT_13s0019g05370.t01	Wine grape	nucleus	76.77	82.07
PGSC0003DMT400022074	Potato	nucleus	76.13	81.94
PGSC0003DMT400022099	Potato	nucleus	76.13	81.94
PGSC0003DMT400070382	Potato	nucleus	76.13	81.94
Solyc11g007930.1.1	Tomato	nucleus	72.9	81.88
GSMUA_Achr2P19080_001	Banana	nucleus	75.48	81.82
Solyc06g074790.1.1	Tomato	nucleus	74.84	81.69
PGSC0003DMT400060096	Potato	nucleus	77.42	81.63
Solyc11g007920.1.1	Tomato	nucleus	75.48	81.25
AT1G07790.1	Thale cress	nucleus	77.42	81.08
Solyc05g055440.1.1	Tomato	nucleus	76.77	80.95
AT3G09480.1	Thale cress	nucleus	65.81	80.95
AT5G22880.1	Thale cress	nucleus	75.48	80.69
Solyc12g013510.1.1	Tomato	nucleus	72.26	80.58
Bra006639.1-P	Field mustard	nucleus	74.84	80.56
Bra011930.1-P	Field mustard	nucleus	77.42	80.54
Bra035677.1-P	Field mustard	nucleus	77.42	80.54
PGSC0003DMT400001108	Potato	nucleus	73.55	80.28
PGSC0003DMT400018456	Potato	nucleus	73.55	80.28
Solyc02g038690.1.1	Tomato	nucleus	69.03	79.85
VIT_06s0004g04300.t01	Wine grape	nucleus	78.06	79.61
PGSC0003DMT400018455	Potato	nucleus	72.26	78.32
Bra000483.1-P	Field mustard	nucleus	78.06	78.06
GSMUA_Achr7P15260_001	Banana	nucleus	76.13	77.63
Solyc06g074780.1.1	Tomato	nucleus	71.61	77.62
PGSC0003DMT400074020	Potato	nucleus	63.23	72.59
CDX71015	Canola	nucleus	28.39	66.67
Solyc10g044580.1.1	Tomato	nucleus	54.84	62.96
VIT_06s0004g04240.t01	Wine grape	nucleus	79.35	53.48
GSMUA_Achr6P33320_001	Banana	nucleus	67.1	50.24
EER98531	Sorghum	nucleus	45.16	23.41
PGSC0003DMT400074018	Potato	nucleus	54.84	22.31

Protein Annotations

Gene3D:1.10.20.10	MapMan:12.1.3	EntrezGene:8071803	UniProt:C5Y096	EnsemblPlants:EES07386	ProteinID:EES07386
ProteinID:EES07386.1	GO:GO:0000786	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005694
GO:GO:0046982	InterPro:Histone-fold	InterPro:Histone_H2A/H2B/H3	InterPro:Histone_H2B	InterPro:IPR009072	PFAM:PF00125
PRINTS:PR00621	ScanProsite:PS00357	PANTHER:PTHR23428	PANTHER:PTHR23428:SF60	SMART:SM00427	EnsemblPlantsGene:SORBI_3004G265400
SUPFAM:SSF47113	UniParc:UPI0001A85AFE	RefSeq:XP_002454410.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr4:-:60998901..60999640

Molecular Weight (calculated)

16735.4 Da

IEP (calculated)

10.768

GRAVY (calculated)

-0.748

Length

155 amino acids

Sequence
(BLAST)

001: MAPKAEKKPA SKKPAEEEPS EKAAPAEKAP AGKKPKAEKR LPAGKSSAGK EGGEKKGRKK GKKSVETYKI YIFKVLKQVH PDIGISSKAM SIMNSFINDI
101: FEKLAAESAK LARYNKKPTI TSREIQTSVR LVLPGELAKH AVSEGTKAVT KFTSS

Best Arabidopsis Sequence Match ( AT3G45980.1 )
(BLAST)

001: MAPRAEKKPA EKKPAAEKPV EEKSKAEKAP AEKKPKAGKK LPKEAGAGGD KKKKMKKKSV ETYKIYIFKV LKQVHPDIGI SSKAMGIMNS FINDIFEKLA
101: SESSKLARYN KKPTITSREI QTAVRLVLPG ELAKHAVSEG TKAVTKFTSS

Arabidopsis Description

H2BHistone H2B [Source:UniProtKB/TrEMBL;Acc:A0A178V9F6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.