CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
vacuole 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, vacuole
BaCelLo:	nucleus
EpiLoc:	vacuole
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161
nucleus: 27291164
endoplasmic reticulum: 28499913
mitochondrion: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG95819	Soybean	nucleus	99.28	99.28
KRH19721	Soybean	nucleus	98.55	97.84
GSMUA_Achr8P20900_001	Banana	nucleus	45.65	95.45
KRH22818	Soybean	nucleus	90.58	93.98
KRH26542	Soybean	nucleus	90.58	93.28
KRH34681	Soybean	nucleus	92.03	92.7
KRG92106	Soybean	nucleus	91.3	92.65
GSMUA_Achr10P...	Banana	nucleus	44.2	92.42
Bra007018.1-P	Field mustard	nucleus	92.03	92.03
AT5G02570.1	Thale cress	nucleus	87.68	91.67
GSMUA_Achr9P04060_001	Banana	nucleus	77.54	91.45
Bra039810.1-P	Field mustard	nucleus	91.3	91.3
CDY30852	Canola	nucleus	91.3	91.3
CDY52745	Canola	nucleus	90.58	91.24
TraesCS6D01G046500.1	Wheat	nucleus	43.48	90.91
TraesCS6B01G055300.1	Wheat	nucleus	63.04	90.62
TraesCS6B01G055500.1	Wheat	nucleus	63.04	90.62
AT3G53650.1	Thale cress	nucleus	90.58	90.58
Bra003150.1-P	Field mustard	nucleus	90.58	90.58
TraesCS7B01G394800.1	Wheat	nucleus	63.04	89.69
TraesCS3A01G075800.1	Wheat	nucleus	62.32	89.58
KRH29833	Soybean	nucleus	90.58	87.41
AT3G09480.1	Thale cress	nucleus	79.71	87.3
TraesCS2A01G312400.1	Wheat	nucleus	74.64	87.29
KRH29831	Soybean	nucleus	93.48	87.16
KRH29832	Soybean	nucleus	93.48	87.16
KRH29836	Soybean	nucleus	93.48	87.16
TraesCS3A01G357500.1	Wheat	nucleus	85.51	86.76
TraesCS3D01G351300.1	Wheat	nucleus	85.51	86.76
TraesCS3D01G351400.1	Wheat	nucleus	85.51	86.76
KRH24830	Soybean	nucleus	93.48	86.58
KRH24831	Soybean	nucleus	93.48	86.58
KRH24833	Soybean	nucleus	93.48	86.58
TraesCS7B01G394500.1	Wheat	nucleus	60.14	86.46
Os01t0839500-00	Rice	nucleus	86.96	86.33
TraesCS3B01G390000.1	Wheat	nucleus	84.78	86.03
TraesCS3B01G390100.1	Wheat	nucleus	84.06	85.93
PGSC0003DMT400018456	Potato	nucleus	88.41	85.92
Os05t0460475-00	Rice	nucleus	65.94	85.85
TraesCS3A01G357400.1	Wheat	nucleus	85.51	85.51
TraesCS3D01G099000.1	Wheat	nucleus	84.06	85.29
PGSC0003DMT400001108	Potato	nucleus	87.68	85.21
Solyc06g074790.1.1	Tomato	nucleus	87.68	85.21
HORVU6Hr1G015790.1	Barley	nucleus	83.33	85.19
TraesCS3B01G114600.1	Wheat	nucleus	83.33	85.19
TraesCS6A01G086400.1	Wheat	nucleus	83.33	85.19
TraesCS6B01G116000.1	Wheat	nucleus	83.33	85.19
TraesCSU01G077200.1	Wheat	nucleus	83.33	85.19
Solyc11g066430.1.1	Tomato	nucleus	86.23	85.0
TraesCS6D01G046600.1	Wheat	nucleus	83.33	84.56
TraesCS6A01G086200.1	Wheat	nucleus	82.61	84.44
TraesCSU01G077400.1	Wheat	nucleus	82.61	84.44
PGSC0003DMT400018455	Potato	nucleus	86.96	83.92
TraesCS3D01G075900.1	Wheat	nucleus	82.61	83.82
TraesCS6A01G040500.1	Wheat	nucleus	82.61	83.82
TraesCS6D01G046200.1	Wheat	nucleus, unclear	82.61	83.82
TraesCS3B01G114400.1	Wheat	nucleus	81.88	83.7
EES03855	Sorghum	nucleus	82.61	83.21
Zm00001d012423_P001	Maize	plastid	82.61	83.21
Zm00001d042930_P001	Maize	plastid	82.61	83.21
TraesCS1B01G294500.1	Wheat	nucleus	89.13	83.11
TraesCS3D01G342400.1	Wheat	nucleus	82.61	82.61
TraesCS7A01G491000.1	Wheat	nucleus	82.61	82.61
TraesCS7B01G394700.1	Wheat	nucleus	82.61	82.61
EES18353	Sorghum	nucleus	87.68	82.31
TraesCS7B01G405800.1	Wheat	nucleus	82.61	82.01
HORVU0Hr1G006420.1	Barley	nucleus	81.88	81.88
HORVU3Hr1G034060.1	Barley	nucleus	81.88	81.88
TraesCS7A01G490900.1	Wheat	nucleus	81.88	81.88
TraesCS7B01G394600.1	Wheat	nucleus	81.88	81.88
TraesCS6D01G046400.1	Wheat	nucleus	82.61	81.43
TraesCS6A01G040400.1	Wheat	nucleus	81.88	81.3
TraesCS6A01G040200.1	Wheat	nucleus	81.16	81.16
TraesCS7B01G394100.1	Wheat	nucleus	81.16	81.16
TraesCS7B01G394400.1	Wheat	nucleus	81.16	81.16
GSMUA_Achr2P19080_001	Banana	nucleus	84.06	81.12
Solyc06g074780.1.1	Tomato	nucleus	84.06	81.12
TraesCS7A01G491100.1	Wheat	extracellular, nucleus, unclear	83.33	80.99
TraesCS7B01G394900.1	Wheat	nucleus	83.33	80.99
TraesCS7D01G477300.1	Wheat	nucleus	83.33	80.99
OQU92807	Sorghum	nucleus	86.23	80.41
TraesCS7D01G477400.1	Wheat	nucleus	82.61	80.28
TraesCS1A01G190400.1	Wheat	nucleus	81.16	80.0
TraesCS3D01G351500.1	Wheat	nucleus	71.01	79.67
TraesCS4D01G205300.1	Wheat	nucleus	81.88	79.58
Zm00001d011236_P001	Maize	plastid	86.23	79.33
EES00304	Sorghum	nucleus	85.51	79.19
TraesCS1B01G357600.1	Wheat	nucleus	82.61	79.17
TraesCS7D01G485700.1	Wheat	nucleus	79.71	79.14
Zm00001d044247_P001	Maize	plastid	84.78	79.05
TraesCS4A01G030500.1	Wheat	nucleus	80.43	78.72
EES00399	Sorghum	nucleus	85.51	78.67
TraesCS6B01G048500.1	Wheat	unclear	82.61	78.62
EES00305	Sorghum	nucleus	84.78	78.52
Zm00001d039821_P001	Maize	plastid	84.78	78.52
TraesCS3A01G102500.1	Wheat	nucleus	81.88	78.47
TraesCS6A01G034500.1	Wheat	nucleus	81.88	78.47
TraesCS6A01G035000.1	Wheat	nucleus	81.88	78.47
TraesCS6B01G048800.1	Wheat	nucleus	81.88	78.47
TraesCS6B01G049100.1	Wheat	nucleus	81.88	78.47
TraesCS6B01G049300.1	Wheat	nucleus	81.88	78.47
HORVU7Hr1G110290.1	Barley	nucleus	57.97	78.43
TraesCSU01G169300.1	Wheat	nucleus	84.06	78.38
TraesCSU01G169400.1	Wheat	nucleus	84.06	78.38
TraesCSU01G169500.1	Wheat	nucleus	84.06	78.38
TraesCSU01G169700.1	Wheat	nucleus	84.06	78.38
TraesCSU01G169800.1	Wheat	nucleus	84.06	78.38
TraesCSU01G169900.1	Wheat	nucleus	84.06	78.38
TraesCSU01G170400.1	Wheat	nucleus	84.06	78.38
TraesCSU01G170500.1	Wheat	nucleus	84.06	78.38
TraesCSU01G170600.1	Wheat	nucleus	84.06	78.38
TraesCSU01G170700.1	Wheat	nucleus	84.06	78.38
TraesCSU01G170900.1	Wheat	nucleus	84.06	78.38
TraesCSU01G171000.1	Wheat	nucleus	84.06	78.38
TraesCSU01G171100.1	Wheat	nucleus	84.06	78.38
EES15460	Sorghum	nucleus	86.23	78.29
TraesCS2D01G310800.1	Wheat	nucleus	86.23	78.29
TraesCS4A01G099900.1	Wheat	nucleus	84.06	77.85
EER96770	Sorghum	nucleus	86.23	77.78
TraesCS6B01G082600.1	Wheat	nucleus	81.16	77.78
GSMUA_Achr7P15260_001	Banana	nucleus	85.51	77.63
Os03t0279000-00	Rice	nucleus	85.51	77.63
Zm00001d020580_P001	Maize	plastid	84.78	77.48
HORVU6Hr1G087190.1	Barley	nucleus	84.06	77.33
Zm00001d025913_P001	Maize	plastid	84.06	77.33
Zm00001d050100_P001	Maize	plastid	84.06	77.33
TraesCS6D01G040200.1	Wheat	nucleus	81.16	77.24
TraesCS6D01G040600.1	Wheat	nucleus	81.16	77.24
TraesCS4B01G204400.1	Wheat	nucleus	83.33	77.18
OQU87075	Sorghum	nucleus	85.51	77.12
Os01t0153100-00	Rice	nucleus	85.51	77.12
TraesCS1B01G244900.1	Wheat	nucleus	84.78	76.97
TraesCS1B01G245300.1	Wheat	nucleus	84.78	76.97
TraesCS3D01G088900.1	Wheat	nucleus	84.78	76.97
TraesCS4A01G260400.1	Wheat	nucleus	84.78	76.97
TraesCS4B01G054200.1	Wheat	nucleus	84.78	76.97
TraesCS4D01G054200.1	Wheat	nucleus	84.78	76.97
TraesCS5A01G384300.1	Wheat	nucleus	84.78	76.97
TraesCS5B01G389100.1	Wheat	nucleus	84.78	76.97
Zm00001d005789_P001	Maize	plastid	84.78	76.97
Zm00001d007084_P001	Maize	plastid	84.78	76.97
EER97675	Sorghum	nucleus	84.06	76.82
TraesCS3A01G088800.1	Wheat	nucleus	84.06	76.82
TraesCS1D01G396600.1	Wheat	golgi, nucleus, unclear	83.33	76.67
Zm00001d032070_P001	Maize	plastid	83.33	76.67
HORVU1Hr1G049920.1	Barley	nucleus	84.78	76.47
Os01t0149600-01	Rice	nucleus	84.78	76.47
Os01t0152900-00	Rice	nucleus	84.78	76.47
TraesCS1B01G192500.1	Wheat	nucleus	84.78	76.47
Os05t0574300-00	Rice	nucleus	84.06	76.32
TraesCS1A01G228700.1	Wheat	nucleus	84.06	76.32
TraesCS1D01G233300.1	Wheat	nucleus	84.06	76.32
EES15092	Sorghum	nucleus	83.33	76.16
TraesCS1B01G416600.1	Wheat	nucleus	83.33	76.16
EES07386	Sorghum	nucleus	85.51	76.13
TraesCS3B01G390300.1	Wheat	nucleus	73.91	76.12
TraesCS4B01G275400.1	Wheat	nucleus	84.78	75.97
Os01t0152300-00	Rice	nucleus	84.06	75.82
TraesCS4A01G030400.1	Wheat	nucleus	84.06	75.32
Zm00001d051591_P001	Maize	plastid	84.06	75.32
HORVU6Hr1G005950.2	Barley	nucleus	84.06	74.84
Os01t0153300-00	Rice	nucleus	84.06	74.84
TraesCS5D01G020000.1	Wheat	nucleus	84.78	74.52
TraesCS1A01G388600.1	Wheat	nucleus	82.61	74.51
TraesCS6B01G376900.1	Wheat	nucleus	81.88	74.34
TraesCS5B01G058200.1	Wheat	nucleus	85.51	74.21
TraesCS5B01G064900.1	Wheat	nucleus, unclear	85.51	74.21
TraesCS1A01G361600.1	Wheat	nucleus	81.88	73.86
TraesCS1A01G367900.1	Wheat	nucleus	81.88	73.86
TraesCS1A01G368000.1	Wheat	nucleus	81.88	73.86
TraesCS1B01G386200.1	Wheat	nucleus	81.88	73.86
TraesCS1B01G386400.1	Wheat	nucleus	81.88	73.86
TraesCS1B01G386700.1	Wheat	nucleus	81.88	73.86
TraesCS1D01G194600.1	Wheat	nucleus	81.88	73.86
TraesCS1D01G366300.1	Wheat	nucleus	81.88	73.86
TraesCS1D01G373800.1	Wheat	nucleus	81.88	73.86
TraesCS1D01G373900.1	Wheat	nucleus	81.88	73.86
HORVU7Hr1G110130.1	Barley	nucleus	63.04	73.73
TraesCS5A01G051900.1	Wheat	nucleus	83.33	73.72
TraesCS1B01G378300.1	Wheat	nucleus	81.16	73.2
TraesCS1B01G386500.1	Wheat	nucleus	81.16	73.2
TraesCS1B01G386600.1	Wheat	nucleus	81.16	73.2
TraesCS6B01G084900.1	Wheat	nucleus	81.16	72.73
TraesCS6D01G326800.1	Wheat	nucleus, unclear	81.16	72.73
HORVU6Hr1G008320.1	Barley	nucleus	82.61	72.61
HORVU7Hr1G110330.2	Barley	nucleus	62.32	72.27
TraesCSU01G081100.1	Wheat	nucleus	80.43	72.08
TraesCS1D01G232900.1	Wheat	nucleus	81.16	71.34
HORVU1Hr1G091370.1	Barley	nucleus	81.88	71.07
HORVU6Hr1G015760.1	Barley	nucleus, plastid	83.33	70.55
HORVU1Hr1G072190.4	Barley	nucleus	89.13	69.89
HORVU7Hr1G110190.1	Barley	nucleus	66.67	69.7
HORVU7Hr1G110170.1	Barley	nucleus	81.88	69.33
HORVU4Hr1G070240.1	Barley	nucleus	83.33	69.28
HORVU3Hr1G013530.1	Barley	nucleus	81.88	68.9
HORVU4Hr1G009040.2	Barley	nucleus	84.06	67.44
TraesCS5D01G393900.1	Wheat	nucleus	79.71	67.07
HORVU3Hr1G013680.1	Barley	nucleus	82.61	67.06
HORVU6Hr1G006110.1	Barley	nucleus, plastid	55.8	65.81
HORVU2Hr1G077630.1	Barley	nucleus	86.23	65.75
HORVU7Hr1G110090.1	Barley	nucleus, plastid	81.88	65.32
HORVU1Hr1G058500.1	Barley	nucleus	85.51	64.48
HORVU4Hr1G073130.1	Barley	nucleus, plastid	84.78	63.93
HORVU1Hr1G078480.6	Barley	nucleus	82.61	63.33
HORVU1Hr1G078530.3	Barley	nucleus	82.61	63.33
HORVU1Hr1G085540.1	Barley	nucleus	81.88	63.13
HORVU6Hr1G083110.1	Barley	nucleus	74.64	60.23
HORVU3Hr1G015810.1	Barley	nucleus, plastid	84.06	55.5
HORVU1Hr1G056530.1	Barley	nucleus, plastid	84.78	55.45
HORVU5Hr1G094500.1	Barley	nucleus, plastid	84.78	55.19
Os08t0490900-00	Rice	nucleus	84.78	55.19
HORVU3Hr1G086580.1	Barley	nucleus, plastid	72.46	54.35
HORVU3Hr1G086610.2	Barley	nucleus	78.99	51.9
GSMUA_Achr6P33320_001	Banana	nucleus	76.81	51.21
Zm00001d048491_P001	Maize	plastid	85.51	49.58
HORVU1Hr1G066130.1	Barley	nucleus	86.23	48.97
TraesCS6B01G081700.1	Wheat	nucleus	55.07	46.34
TraesCS6D01G063200.1	Wheat	nucleus	55.07	38.38
TraesCS6A01G061400.1	Wheat	nucleus	55.07	36.36
KRH30545	Soybean	mitochondrion, nucleus	49.28	34.17
KRH25129	Soybean	nucleus	52.17	32.0

Protein Annotations

Gene3D:1.10.20.10	EntrezGene:100805396	MapMan:12.1.3	UniProt:A0A0R0KKD0	EMBL:ACUP02002066	EnsemblPlantsGene:GLYMA_03G172500
GO:GO:0000786	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005694	GO:GO:0046982
InterPro:Histone-fold	InterPro:Histone_H2A/H2B/H3	InterPro:Histone_H2B	InterPro:IPR009072	EnsemblPlants:KRH67549	ProteinID:KRH67549
ProteinID:KRH67549.1	PFAM:PF00125	PRINTS:PR00621	ScanProsite:PS00357	PANTHER:PTHR23428	PANTHER:PTHR23428:SF155
SMART:SM00427	SUPFAM:SSF47113	UniParc:UPI0001817FB1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr3:-:38668741..38670634

Molecular Weight (calculated)

15339.8 Da

IEP (calculated)

10.824

GRAVY (calculated)

-0.784

Length

138 amino acids

Sequence
(BLAST)

001: MAPPKAEKKP AEKKPAEKAP AEKKPKAEKK ISKEGGSEKK KKRTKKSVET YKIYIFKVLK QVHPDIGISS KAMGIMNSFI NDIFEKLAQE SSRLARYNKK
101: PTITSREIQT AVRLVLPGEL AKHAVSEGTK AVTKFTSS

Best Arabidopsis Sequence Match ( AT1G07790.1 )
(BLAST)

001: MAPRAEKKPA EKKTAAERPV EENKAAEKAP AEKKPKAGKK LPPKEAGDKK KKRSKKNVET YKIYIFKVLK QVHPDIGISS KAMGIMNSFI NDIFEKLAQE
101: SSKLARYNKK PTITSREIQT AVRLVLPGEL AKHAVSEGTK AVTKFTSS

Arabidopsis Description

HTB1Histone H2B.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQQ4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.