Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plastid:
22065420
plastid: 23198870 mitochondrion: 27297264 |
msms PMID:
27297264
doi
Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d050100_P001 | Maize | plastid | 97.33 | 97.33 |
| Zm00001d025913_P001 | Maize | plastid | 96.67 | 96.67 |
| EES15092 | Sorghum | nucleus | 96.0 | 95.36 |
| Zm00001d007084_P001 | Maize | plastid | 94.67 | 93.42 |
| Zm00001d039821_P001 | Maize | plastid | 92.67 | 93.29 |
| Zm00001d012423_P001 | Maize | plastid | 84.67 | 92.7 |
| Zm00001d011236_P001 | Maize | plastid | 92.67 | 92.67 |
| Zm00001d005789_P001 | Maize | plastid | 93.33 | 92.11 |
| Zm00001d042930_P001 | Maize | plastid | 84.0 | 91.97 |
| Zm00001d044247_P001 | Maize | plastid | 90.67 | 91.89 |
| GSMUA_Achr9P04060_001 | Banana | nucleus | 71.33 | 91.45 |
| Zm00001d020580_P001 | Maize | plastid | 92.0 | 91.39 |
| Os05t0574300-00 | Rice | nucleus | 92.0 | 90.79 |
| Zm00001d051591_P001 | Maize | plastid | 92.67 | 90.26 |
| Os01t0152900-00 | Rice | nucleus | 92.0 | 90.2 |
| Os01t0153100-00 | Rice | nucleus | 92.0 | 90.2 |
| Os01t0149600-01 | Rice | nucleus | 91.33 | 89.54 |
| Os01t0152300-00 | Rice | nucleus | 90.67 | 88.89 |
| Os01t0153300-00 | Rice | nucleus | 91.33 | 88.39 |
| TraesCS6B01G084900.1 | Wheat | nucleus | 90.67 | 88.31 |
| KRH26542 | Soybean | nucleus | 76.67 | 85.82 |
| KRH22818 | Soybean | nucleus | 76.0 | 85.71 |
| KRH19721 | Soybean | nucleus | 78.0 | 84.17 |
| Bra007018.1-P | Field mustard | nucleus | 77.33 | 84.06 |
| Bra039810.1-P | Field mustard | nucleus | 77.33 | 84.06 |
| KRG95819 | Soybean | nucleus | 76.67 | 83.33 |
| KRH67549 | Soybean | nucleus | 76.67 | 83.33 |
| AT2G37470.1 | Thale cress | nucleus | 76.67 | 83.33 |
| VIT_06s0004g04230.t01 | Wine grape | nucleus | 80.67 | 82.88 |
| Bra003150.1-P | Field mustard | nucleus | 76.0 | 82.61 |
| GSMUA_Achr2P19080_001 | Banana | nucleus | 78.67 | 82.52 |
| Bra038267.1-P | Field mustard | nucleus | 75.33 | 82.48 |
| KRH34681 | Soybean | nucleus | 75.33 | 82.48 |
| KRG92106 | Soybean | nucleus | 74.67 | 82.35 |
| Solyc03g071620.1.1 | Tomato | nucleus | 77.33 | 82.27 |
| PGSC0003DMT400043578 | Potato | nucleus | 77.33 | 82.27 |
| PGSC0003DMT400077939 | Potato | nucleus | 80.0 | 82.19 |
| Solyc06g075800.1.1 | Tomato | nucleus | 80.0 | 82.19 |
| AT3G46030.1 | Thale cress | nucleus | 79.33 | 82.07 |
| AT5G59910.1 | Thale cress | nucleus | 82.0 | 82.0 |
| Bra002520.1-P | Field mustard | nucleus | 82.0 | 82.0 |
| AT5G02570.1 | Thale cress | nucleus | 72.0 | 81.82 |
| PGSC0003DMT400070383 | Potato | nucleus | 77.33 | 81.69 |
| Bra020275.1-P | Field mustard | nucleus | 77.33 | 81.69 |
| Bra006685.1-P | Field mustard | nucleus | 76.67 | 81.56 |
| Solyc11g066430.1.1 | Tomato | nucleus | 76.0 | 81.43 |
| VIT_13s0019g05370.t01 | Wine grape | nucleus | 78.67 | 81.38 |
| AT3G53650.1 | Thale cress | nucleus | 74.67 | 81.16 |
| VIT_06s0004g04250.t01 | Wine grape | nucleus | 80.0 | 81.08 |
| AT3G09480.1 | Thale cress | nucleus | 68.0 | 80.95 |
| Bra002436.1-P | Field mustard | nucleus | 76.0 | 80.85 |
| AT2G28720.1 | Thale cress | nucleus | 81.33 | 80.79 |
| AT3G45980.1 | Thale cress | nucleus | 80.67 | 80.67 |
| PGSC0003DMT400070382 | Potato | nucleus | 77.33 | 80.56 |
| Bra035677.1-P | Field mustard | nucleus | 80.0 | 80.54 |
| Solyc11g007930.1.1 | Tomato | nucleus | 74.0 | 80.43 |
| Solyc06g074790.1.1 | Tomato | nucleus | 76.0 | 80.28 |
| PGSC0003DMT400074994 | Potato | nucleus | 78.67 | 80.27 |
| Solyc06g005390.1.1 | Tomato | nucleus | 78.67 | 80.27 |
| AT5G22880.1 | Thale cress | nucleus | 77.33 | 80.0 |
| Bra011930.1-P | Field mustard | nucleus | 79.33 | 79.87 |
| Solyc11g007920.1.1 | Tomato | nucleus | 76.67 | 79.86 |
| KRH29831 | Soybean | nucleus | 78.67 | 79.73 |
| KRH29832 | Soybean | nucleus | 78.67 | 79.73 |
| KRH29836 | Soybean | nucleus | 78.67 | 79.73 |
| KRH29833 | Soybean | nucleus | 76.0 | 79.72 |
| PGSC0003DMT400060096 | Potato | nucleus | 78.0 | 79.59 |
| PGSC0003DMT400001108 | Potato | nucleus | 75.33 | 79.58 |
| KRH24831 | Soybean | nucleus | 78.67 | 79.19 |
| KRH24833 | Soybean | nucleus | 78.67 | 79.19 |
| Bra006639.1-P | Field mustard | nucleus | 76.0 | 79.17 |
| PGSC0003DMT400022074 | Potato | nucleus | 76.0 | 79.17 |
| PGSC0003DMT400022099 | Potato | nucleus | 76.0 | 79.17 |
| Solyc05g055440.1.1 | Tomato | nucleus | 77.33 | 78.91 |
| PGSC0003DMT400018456 | Potato | nucleus | 74.67 | 78.87 |
| KRH24830 | Soybean | nucleus | 78.0 | 78.52 |
| Solyc12g013510.1.1 | Tomato | nucleus | 72.67 | 78.42 |
| AT1G07790.1 | Thale cress | nucleus | 77.33 | 78.38 |
| Solyc02g038690.1.1 | Tomato | nucleus | 70.0 | 78.36 |
| PGSC0003DMT400018455 | Potato | nucleus | 74.67 | 78.32 |
| VIT_06s0004g04300.t01 | Wine grape | nucleus | 78.67 | 77.63 |
| Solyc06g074780.1.1 | Tomato | nucleus | 74.0 | 77.62 |
| Bra000483.1-P | Field mustard | nucleus | 80.0 | 77.42 |
| GSMUA_Achr7P15260_001 | Banana | nucleus | 77.33 | 76.32 |
| PGSC0003DMT400074020 | Potato | nucleus | 62.67 | 69.63 |
| CDX71015 | Canola | nucleus | 29.33 | 66.67 |
| Os08t0490900-00 | Rice | nucleus | 88.67 | 62.74 |
| Solyc10g044580.1.1 | Tomato | nucleus | 55.33 | 61.48 |
| Zm00001d048491_P001 | Maize | plastid | 94.67 | 59.66 |
| TraesCS6B01G081700.1 | Wheat | nucleus | 59.33 | 54.27 |
| VIT_06s0004g04240.t01 | Wine grape | nucleus | 80.67 | 52.61 |
| GSMUA_Achr6P33320_001 | Banana | nucleus | 69.33 | 50.24 |
| TraesCS6D01G063200.1 | Wheat | nucleus | 64.0 | 48.48 |
| TraesCS6A01G061400.1 | Wheat | nucleus | 64.67 | 46.41 |
| Zm00001d005322_P001 | Maize | nucleus | 40.67 | 23.28 |
| PGSC0003DMT400074018 | Potato | nucleus | 54.67 | 21.52 |
Protein Annotations
| Gene3D:1.10.20.10 | EntrezGene:100502158 | MapMan:12.1.3 | UniProt:B6SJZ5 | EMBL:BT087239 | EMBL:EU953060 |
| GO:GO:0000786 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005694 | GO:GO:0046982 |
| InterPro:Histone-fold | InterPro:Histone_H2A/H2B/H3 | InterPro:Histone_H2B | InterPro:IPR009072 | ProteinID:ONM04324.1 | PFAM:PF00125 |
| PRINTS:PR00621 | ScanProsite:PS00357 | PANTHER:PTHR23428 | PANTHER:PTHR23428:SF72 | SMART:SM00427 | SUPFAM:SSF47113 |
| UniParc:UPI000182BB16 | EnsemblPlantsGene:Zm00001d032070 | EnsemblPlants:Zm00001d032070_P001 | EnsemblPlants:Zm00001d032070_T001 | SEG:seg | : |
Description
Histone H2B
Coordinates
chr1:+:211247689..211248141
Molecular Weight (calculated)
16166.8 Da
IEP (calculated)
10.795
GRAVY (calculated)
-0.705
Length
150 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPKAEKKPA AKKPAEEEPA AEKTTAGKKP KAEKRVPAGK SAGKEGGEGK RGKKKGKKSV ETYKIYIFKV LKQVHPDIGI SSKAMSIMNS FINDIFEKLA
101: GEAAKLARYN KKPTITSREI QTSVRLVLPG ELAKHAVSEG TKAVTKFTSS
101: GEAAKLARYN KKPTITSREI QTSVRLVLPG ELAKHAVSEG TKAVTKFTSS
001: MAPRAEKKPA EKKPAAEKPV EEKSKAEKAP AEKKPKAGKK LPKEAGAGGD KKKKMKKKSV ETYKIYIFKV LKQVHPDIGI SSKAMGIMNS FINDIFEKLA
101: SESSKLARYN KKPTITSREI QTAVRLVLPG ELAKHAVSEG TKAVTKFTSS
101: SESSKLARYN KKPTITSREI QTAVRLVLPG ELAKHAVSEG TKAVTKFTSS
Arabidopsis Description
H2BHistone H2B [Source:UniProtKB/TrEMBL;Acc:A0A178V9F6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.