Skip to main content
crop-pal logo
Rice
Search for another protein from :
Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • plastid 6
  • endoplasmic reticulum 1
  • nucleus 3
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:endoplasmic reticulum, nucleus, plastid
BaCelLo:plastid
EpiLoc:endoplasmic reticulum
iPSORT:plastid
MultiLoc:nucleus
Plant-mPloc:nucleus
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:nucleus
 nucleus: 18203134
nucleus: 23777608
msms PMID: 18203134 doi
G Li, BR Nallamilli, F Tan, Z Peng
Department of Biochemistry and Molecular Biology, Mississippi State University, Mississippi State, MS 39762, USA.
msms PMID: 23777608 doi
H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
GSMUA_Achr9P04060_001 Banana nucleus 51.42 93.16
Os05t0460475-00 Rice nucleus 45.75 91.51
Os05t0574300-00 Rice nucleus 65.09 90.79
Os01t0839500-00 Rice nucleus 59.43 90.65
Zm00001d050100_P001 Maize plastid 63.68 90.0
Os01t0149600-01 Rice nucleus 64.62 89.54
Os01t0153100-00 Rice nucleus 64.62 89.54
Os01t0152900-00 Rice nucleus 64.62 89.54
EES15092 Sorghum nucleus 63.68 89.4
Os01t0153300-00 Rice nucleus 65.09 89.03
Os01t0152300-00 Rice nucleus 64.15 88.89
Zm00001d032070_P001 Maize plastid 62.74 88.67
Zm00001d025913_P001 Maize plastid 62.74 88.67
Os03t0279000-00 Rice nucleus 63.21 88.16
KRH26542 Soybean nucleus 54.72 86.57
KRH22818 Soybean nucleus 54.25 86.47
Bra007018.1-P Field mustard nucleus 56.13 86.23
KRH19721 Soybean nucleus 56.13 85.61
Bra039810.1-P Field mustard nucleus 55.66 85.51
PGSC0003DMT400077939 Potato nucleus 58.49 84.93
Solyc06g075800.1.1 Tomato nucleus 58.49 84.93
KRG95819 Soybean nucleus 55.19 84.78
KRH67549 Soybean nucleus 55.19 84.78
PGSC0003DMT400070382 Potato nucleus 57.55 84.72
PGSC0003DMT400043578 Potato nucleus 56.13 84.4
Solyc03g071620.1.1 Tomato nucleus 56.13 84.4
Bra006685.1-P Field mustard nucleus 56.13 84.4
KRG92106 Soybean nucleus 53.77 83.82
VIT_06s0004g04230.t01 Wine grape nucleus 57.55 83.56
VIT_13s0019g05370.t01 Wine grape nucleus 57.08 83.45
AT3G46030.1 Thale cress nucleus 57.08 83.45
AT2G37470.1 Thale cress nucleus 54.25 83.33
AT5G59910.1 Thale cress nucleus 58.96 83.33
Bra002520.1-P Field mustard nucleus 58.96 83.33
Bra003150.1-P Field mustard nucleus 54.25 83.33
GSMUA_Achr2P19080_001 Banana nucleus 56.13 83.22
KRH34681 Soybean nucleus 53.77 83.21
Bra038267.1-P Field mustard nucleus 53.77 83.21
VIT_06s0004g04250.t01 Wine grape nucleus 58.02 83.11
Bra002436.1-P Field mustard nucleus 55.19 82.98
Solyc11g066430.1.1 Tomato nucleus 54.72 82.86
Solyc11g007920.1.1 Tomato nucleus 56.13 82.64
AT5G02570.1 Thale cress nucleus 51.42 82.58
KRH29831 Soybean nucleus 57.55 82.43
KRH29832 Soybean nucleus 57.55 82.43
KRH29836 Soybean nucleus 57.55 82.43
Bra020275.1-P Field mustard nucleus 55.19 82.39
PGSC0003DMT400070383 Potato nucleus 55.19 82.39
Solyc06g074790.1.1 Tomato nucleus 55.19 82.39
Solyc06g005390.1.1 Tomato nucleus 57.08 82.31
PGSC0003DMT400074994 Potato nucleus 57.08 82.31
AT3G45980.1 Thale cress nucleus 58.02 82.0
Solyc11g007930.1.1 Tomato nucleus 53.3 81.88
KRH24833 Soybean nucleus 57.55 81.88
KRH24831 Soybean nucleus 57.55 81.88
KRH29833 Soybean nucleus 55.19 81.82
PGSC0003DMT400060096 Potato nucleus 56.6 81.63
AT5G22880.1 Thale cress nucleus 55.66 81.38
PGSC0003DMT400022074 Potato nucleus 55.19 81.25
KRH24830 Soybean nucleus 57.08 81.21
AT3G53650.1 Thale cress nucleus 52.83 81.16
Solyc06g074780.1.1 Tomato nucleus 54.72 81.12
PGSC0003DMT400001108 Potato nucleus 54.25 80.99
PGSC0003DMT400018456 Potato nucleus 54.25 80.99
Solyc05g055440.1.1 Tomato nucleus 56.13 80.95
AT3G09480.1 Thale cress nucleus 48.11 80.95
AT2G28720.1 Thale cress nucleus 57.55 80.79
Solyc02g038690.1.1 Tomato nucleus 50.94 80.6
Solyc12g013510.1.1 Tomato nucleus 52.83 80.58
PGSC0003DMT400022099 Potato nucleus 54.72 80.56
Bra006639.1-P Field mustard nucleus 54.72 80.56
Bra011930.1-P Field mustard nucleus 56.6 80.54
Bra035677.1-P Field mustard nucleus 56.6 80.54
PGSC0003DMT400018455 Potato nucleus 54.25 80.42
AT1G07790.1 Thale cress nucleus 56.13 80.41
VIT_06s0004g04300.t01 Wine grape nucleus 57.55 80.26
GSMUA_Achr7P15260_001 Banana nucleus 55.66 77.63
Bra000483.1-P Field mustard nucleus 56.6 77.42
PGSC0003DMT400074020 Potato nucleus 46.7 73.33
CDX71015 Canola nucleus 20.75 66.67
Solyc10g044580.1.1 Tomato nucleus 39.62 62.22
VIT_06s0004g04240.t01 Wine grape nucleus 59.91 55.22
GSMUA_Achr6P33320_001 Banana nucleus 51.42 52.66
Os09t0570850-00 Rice nucleus 25.94 36.18
PGSC0003DMT400074018 Potato nucleus 43.4 24.15
Protein Annotations
Gene3D:1.10.20.10MapMan:12.1.3UniProt:A0A0P0XHD8ProteinID:BAT06016.1GO:GO:0000786GO:GO:0003674
GO:GO:0003676GO:GO:0003677GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634GO:GO:0005694GO:GO:0046982InterPro:Histone-foldInterPro:Histone_H2A/H2B/H3
InterPro:Histone_H2BInterPro:IPR009072EnsemblPlantsGene:Os08g0490900EnsemblPlants:Os08t0490900-00PFAM:PF00125PRINTS:PR00621
ScanProsite:PS00357PANTHER:PTHR23428PANTHER:PTHR23428:SF72SMART:SM00427SUPFAM:SSF47113UniParc:UPI000393B051
SEG:seg:::::
Description
Similar to Histone H2B.2. (Os08t0490900-00)
Coordinates
chr8:+:24261228..24262081
Molecular Weight (calculated)
23131.1 Da
IEP (calculated)
11.078
GRAVY (calculated)
-0.834
Length
212 amino acids
Sequence
(BLAST)
001: MCSTSSIRGT PPPTNRAPPL HRYKIANSSS PHNTIQSPNQ KHTRLASFRS FRPTPPPPPP ISMAPKAEKK PAEKKPAEEK AGEKAPAAGK KPKAEKRLPA
101: SKGEKGGEGK KERGRKKAKK SVETYKIYIF KVLKQVHPDI GISSKAMSIM NSFINDIFEK LAGEAAKLAR YNKKPTITSR EIQTSVRLVL PGELAKHAVS
201: EGTKAVTKFT SS
Best Arabidopsis Sequence Match ( AT3G45980.1 )
(BLAST)
001: MAPRAEKKPA EKKPAAEKPV EEKSKAEKAP AEKKPKAGKK LPKEAGAGGD KKKKMKKKSV ETYKIYIFKV LKQVHPDIGI SSKAMGIMNS FINDIFEKLA
101: SESSKLARYN KKPTITSREI QTAVRLVLPG ELAKHAVSEG TKAVTKFTSS
Arabidopsis Description
H2BHistone H2B [Source:UniProtKB/TrEMBL;Acc:A0A178V9F6]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.