Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- vacuole 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
25464976
nucleus: 28394025 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400077939 | Potato | nucleus | 99.32 | 99.32 |
| GSMUA_Achr8P20900_001 | Banana | nucleus | 43.15 | 95.45 |
| Solyc03g071620.1.1 | Tomato | nucleus | 91.1 | 94.33 |
| GSMUA_Achr9P04060_001 | Banana | nucleus | 75.34 | 94.02 |
| VIT_06s0004g04250.t01 | Wine grape | nucleus | 94.52 | 93.24 |
| VIT_06s0004g04230.t01 | Wine grape | nucleus | 93.15 | 93.15 |
| KRH29831 | Soybean | nucleus | 93.84 | 92.57 |
| KRH29832 | Soybean | nucleus | 93.84 | 92.57 |
| KRH29836 | Soybean | nucleus | 93.84 | 92.57 |
| GSMUA_Achr10P... | Banana | nucleus | 41.78 | 92.42 |
| KRH29833 | Soybean | nucleus | 90.41 | 92.31 |
| KRH24831 | Soybean | nucleus | 93.84 | 91.95 |
| KRH24833 | Soybean | nucleus | 93.84 | 91.95 |
| TraesCS6B01G055300.1 | Wheat | nucleus | 60.27 | 91.67 |
| TraesCS6B01G055500.1 | Wheat | nucleus | 60.27 | 91.67 |
| Solyc06g074790.1.1 | Tomato | nucleus | 89.04 | 91.55 |
| Solyc11g066430.1.1 | Tomato | nucleus | 87.67 | 91.43 |
| KRH24830 | Soybean | nucleus | 93.15 | 91.28 |
| Solyc11g007920.1.1 | Tomato | nucleus | 89.73 | 90.97 |
| TraesCS6D01G046500.1 | Wheat | nucleus | 41.1 | 90.91 |
| TraesCS7B01G394800.1 | Wheat | nucleus | 60.27 | 90.72 |
| TraesCS3A01G075800.1 | Wheat | nucleus | 59.59 | 90.62 |
| VIT_06s0004g04300.t01 | Wine grape | nucleus | 93.84 | 90.13 |
| Solyc05g055440.1.1 | Tomato | nucleus | 90.41 | 89.8 |
| Solyc12g013510.1.1 | Tomato | nucleus | 84.93 | 89.21 |
| Solyc11g007930.1.1 | Tomato | nucleus | 84.25 | 89.13 |
| Solyc06g005390.1.1 | Tomato | nucleus | 89.73 | 89.12 |
| TraesCS3A01G357500.1 | Wheat | nucleus | 82.88 | 88.97 |
| TraesCS3D01G351300.1 | Wheat | nucleus | 82.88 | 88.97 |
| TraesCS3D01G351400.1 | Wheat | nucleus | 82.88 | 88.97 |
| TraesCS3B01G390000.1 | Wheat | nucleus | 82.19 | 88.24 |
| TraesCS3B01G390100.1 | Wheat | nucleus | 81.51 | 88.15 |
| TraesCS2A01G312400.1 | Wheat | nucleus | 71.23 | 88.14 |
| Solyc06g074780.1.1 | Tomato | nucleus | 86.3 | 88.11 |
| Os01t0839500-00 | Rice | nucleus | 83.56 | 87.77 |
| Os05t0460475-00 | Rice | nucleus | 63.7 | 87.74 |
| TraesCS3A01G357400.1 | Wheat | nucleus | 82.88 | 87.68 |
| TraesCS7B01G394500.1 | Wheat | nucleus | 57.53 | 87.5 |
| Solyc02g038690.1.1 | Tomato | nucleus | 80.14 | 87.31 |
| EES03855 | Sorghum | nucleus | 81.51 | 86.86 |
| Zm00001d012423_P001 | Maize | plastid | 81.51 | 86.86 |
| TraesCS1B01G294500.1 | Wheat | nucleus | 87.67 | 86.49 |
| Zm00001d042930_P001 | Maize | plastid | 80.82 | 86.13 |
| GSMUA_Achr2P19080_001 | Banana | nucleus | 84.25 | 86.01 |
| TraesCS6A01G086400.1 | Wheat | nucleus | 79.45 | 85.93 |
| TraesCS6B01G116000.1 | Wheat | nucleus | 79.45 | 85.93 |
| TraesCSU01G077200.1 | Wheat | nucleus | 79.45 | 85.93 |
| TraesCS3D01G099000.1 | Wheat | nucleus | 79.45 | 85.29 |
| TraesCS6A01G040500.1 | Wheat | nucleus | 79.45 | 85.29 |
| HORVU6Hr1G015790.1 | Barley | nucleus | 78.77 | 85.19 |
| TraesCS3B01G114600.1 | Wheat | nucleus | 78.77 | 85.19 |
| TraesCS6A01G086200.1 | Wheat | nucleus | 78.77 | 85.19 |
| TraesCSU01G077400.1 | Wheat | nucleus | 78.77 | 85.19 |
| TraesCS3D01G075900.1 | Wheat | nucleus | 78.77 | 84.56 |
| TraesCS6D01G046200.1 | Wheat | nucleus, unclear | 78.77 | 84.56 |
| TraesCS6D01G046600.1 | Wheat | nucleus | 78.77 | 84.56 |
| EES18353 | Sorghum | nucleus | 84.93 | 84.35 |
| EES00304 | Sorghum | nucleus | 85.62 | 83.89 |
| OQU92807 | Sorghum | nucleus | 84.93 | 83.78 |
| TraesCS3B01G114400.1 | Wheat | nucleus | 77.4 | 83.7 |
| EES15460 | Sorghum | nucleus | 86.99 | 83.55 |
| EES00399 | Sorghum | nucleus | 85.62 | 83.33 |
| Zm00001d011236_P001 | Maize | plastid | 85.62 | 83.33 |
| EES00305 | Sorghum | nucleus | 84.93 | 83.22 |
| TraesCS4D01G205300.1 | Wheat | nucleus | 80.82 | 83.1 |
| TraesCS7A01G491100.1 | Wheat | extracellular, nucleus, unclear | 80.82 | 83.1 |
| TraesCS7B01G394900.1 | Wheat | nucleus | 80.82 | 83.1 |
| TraesCS7D01G477300.1 | Wheat | nucleus | 80.82 | 83.1 |
| TraesCS6D01G046400.1 | Wheat | nucleus | 79.45 | 82.86 |
| TraesCS6A01G040400.1 | Wheat | nucleus | 78.77 | 82.73 |
| TraesCS3D01G342400.1 | Wheat | nucleus | 78.08 | 82.61 |
| TraesCS7A01G490900.1 | Wheat | nucleus | 78.08 | 82.61 |
| TraesCS7A01G491000.1 | Wheat | nucleus | 78.08 | 82.61 |
| TraesCS7B01G394700.1 | Wheat | nucleus | 78.08 | 82.61 |
| Zm00001d039821_P001 | Maize | plastid | 84.25 | 82.55 |
| Zm00001d044247_P001 | Maize | plastid | 83.56 | 82.43 |
| TraesCS7D01G477400.1 | Wheat | nucleus | 80.14 | 82.39 |
| EER96770 | Sorghum | nucleus | 86.3 | 82.35 |
| Os03t0279000-00 | Rice | nucleus | 85.62 | 82.24 |
| TraesCS2D01G310800.1 | Wheat | nucleus | 85.62 | 82.24 |
| TraesCS4A01G260400.1 | Wheat | nucleus | 85.62 | 82.24 |
| TraesCS4D01G054200.1 | Wheat | nucleus | 85.62 | 82.24 |
| TraesCS1A01G190400.1 | Wheat | nucleus | 78.77 | 82.14 |
| TraesCS7B01G405800.1 | Wheat | nucleus | 78.08 | 82.01 |
| HORVU6Hr1G087190.1 | Barley | nucleus | 84.25 | 82.0 |
| HORVU0Hr1G006420.1 | Barley | nucleus | 77.4 | 81.88 |
| HORVU3Hr1G034060.1 | Barley | nucleus | 77.4 | 81.88 |
| TraesCS6A01G040200.1 | Wheat | nucleus | 77.4 | 81.88 |
| TraesCS7B01G394600.1 | Wheat | nucleus | 77.4 | 81.88 |
| TraesCSU01G169300.1 | Wheat | nucleus | 82.88 | 81.76 |
| TraesCSU01G169400.1 | Wheat | nucleus | 82.88 | 81.76 |
| TraesCSU01G169500.1 | Wheat | nucleus | 82.88 | 81.76 |
| TraesCSU01G169700.1 | Wheat | nucleus | 82.88 | 81.76 |
| TraesCSU01G169800.1 | Wheat | nucleus | 82.88 | 81.76 |
| TraesCSU01G169900.1 | Wheat | nucleus | 82.88 | 81.76 |
| TraesCSU01G170400.1 | Wheat | nucleus | 82.88 | 81.76 |
| TraesCSU01G170500.1 | Wheat | nucleus | 82.88 | 81.76 |
| TraesCSU01G170600.1 | Wheat | nucleus | 82.88 | 81.76 |
| TraesCSU01G170700.1 | Wheat | nucleus | 82.88 | 81.76 |
| TraesCSU01G170900.1 | Wheat | nucleus | 82.88 | 81.76 |
| TraesCSU01G171000.1 | Wheat | nucleus | 82.88 | 81.76 |
| TraesCSU01G171100.1 | Wheat | nucleus | 82.88 | 81.76 |
| OQU87075 | Sorghum | nucleus | 85.62 | 81.7 |
| TraesCS3D01G088900.1 | Wheat | nucleus | 84.93 | 81.58 |
| TraesCS4B01G054200.1 | Wheat | nucleus | 84.93 | 81.58 |
| TraesCS5A01G384300.1 | Wheat | nucleus | 84.93 | 81.58 |
| Zm00001d007084_P001 | Maize | plastid | 84.93 | 81.58 |
| TraesCS3A01G088800.1 | Wheat | nucleus | 84.25 | 81.46 |
| Zm00001d020580_P001 | Maize | plastid | 84.25 | 81.46 |
| Zm00001d025913_P001 | Maize | plastid | 83.56 | 81.33 |
| TraesCS3D01G351500.1 | Wheat | nucleus | 68.49 | 81.3 |
| TraesCS4A01G099900.1 | Wheat | nucleus | 82.88 | 81.21 |
| TraesCS7B01G394100.1 | Wheat | nucleus | 76.71 | 81.16 |
| TraesCS7B01G394400.1 | Wheat | nucleus | 76.71 | 81.16 |
| TraesCS1B01G244900.1 | Wheat | nucleus | 84.25 | 80.92 |
| TraesCS1B01G245300.1 | Wheat | nucleus | 84.25 | 80.92 |
| TraesCS5B01G389100.1 | Wheat | nucleus | 84.25 | 80.92 |
| Zm00001d005789_P001 | Maize | plastid | 84.25 | 80.92 |
| TraesCS4A01G030500.1 | Wheat | nucleus | 78.08 | 80.85 |
| TraesCS1B01G416600.1 | Wheat | nucleus | 83.56 | 80.79 |
| Zm00001d050100_P001 | Maize | plastid | 82.88 | 80.67 |
| EES07386 | Sorghum | nucleus | 85.62 | 80.65 |
| TraesCS4B01G204400.1 | Wheat | nucleus | 82.19 | 80.54 |
| Zm00001d051591_P001 | Maize | plastid | 84.93 | 80.52 |
| HORVU1Hr1G049920.1 | Barley | nucleus | 84.25 | 80.39 |
| HORVU7Hr1G110290.1 | Barley | nucleus | 56.16 | 80.39 |
| Os01t0149600-01 | Rice | nucleus | 84.25 | 80.39 |
| Os01t0153100-00 | Rice | nucleus | 84.25 | 80.39 |
| TraesCS1B01G192500.1 | Wheat | nucleus | 84.25 | 80.39 |
| TraesCS1A01G228700.1 | Wheat | nucleus | 83.56 | 80.26 |
| TraesCS1D01G233300.1 | Wheat | nucleus | 83.56 | 80.26 |
| EER97675 | Sorghum | nucleus | 82.88 | 80.13 |
| EES15092 | Sorghum | nucleus | 82.88 | 80.13 |
| TraesCS1D01G396600.1 | Wheat | golgi, nucleus, unclear | 82.19 | 80.0 |
| Zm00001d032070_P001 | Maize | plastid | 82.19 | 80.0 |
| TraesCS4B01G275400.1 | Wheat | nucleus | 84.25 | 79.87 |
| TraesCS1B01G357600.1 | Wheat | nucleus | 78.77 | 79.86 |
| Os01t0152300-00 | Rice | nucleus | 83.56 | 79.74 |
| Os01t0152900-00 | Rice | nucleus | 83.56 | 79.74 |
| Os05t0574300-00 | Rice | nucleus | 82.88 | 79.61 |
| TraesCS6B01G048500.1 | Wheat | unclear | 78.77 | 79.31 |
| TraesCS4A01G030400.1 | Wheat | nucleus | 83.56 | 79.22 |
| TraesCS3A01G102500.1 | Wheat | nucleus | 78.08 | 79.17 |
| TraesCS6A01G034500.1 | Wheat | nucleus | 78.08 | 79.17 |
| TraesCS6A01G035000.1 | Wheat | nucleus | 78.08 | 79.17 |
| TraesCS6B01G048800.1 | Wheat | nucleus | 78.08 | 79.17 |
| TraesCS6B01G049100.1 | Wheat | nucleus | 78.08 | 79.17 |
| TraesCS6B01G049300.1 | Wheat | nucleus | 78.08 | 79.17 |
| TraesCS7D01G485700.1 | Wheat | nucleus | 75.34 | 79.14 |
| Os01t0153300-00 | Rice | nucleus | 83.56 | 78.71 |
| TraesCS5B01G058200.1 | Wheat | nucleus | 85.62 | 78.62 |
| TraesCS5B01G064900.1 | Wheat | nucleus, unclear | 85.62 | 78.62 |
| TraesCS6B01G082600.1 | Wheat | nucleus | 77.4 | 78.47 |
| TraesCS1A01G388600.1 | Wheat | nucleus | 82.19 | 78.43 |
| GSMUA_Achr7P15260_001 | Banana | nucleus | 81.51 | 78.29 |
| TraesCS6B01G376900.1 | Wheat | nucleus | 81.51 | 78.29 |
| TraesCS5A01G051900.1 | Wheat | nucleus | 83.56 | 78.21 |
| TraesCS6D01G040600.1 | Wheat | nucleus | 77.4 | 77.93 |
| TraesCS6B01G084900.1 | Wheat | nucleus | 82.19 | 77.92 |
| TraesCS1A01G361600.1 | Wheat | nucleus | 81.51 | 77.78 |
| TraesCS1A01G367900.1 | Wheat | nucleus | 81.51 | 77.78 |
| TraesCS1A01G368000.1 | Wheat | nucleus | 81.51 | 77.78 |
| TraesCS1B01G386200.1 | Wheat | nucleus | 81.51 | 77.78 |
| TraesCS1B01G386400.1 | Wheat | nucleus | 81.51 | 77.78 |
| TraesCS1B01G386700.1 | Wheat | nucleus | 81.51 | 77.78 |
| TraesCS1D01G194600.1 | Wheat | nucleus | 81.51 | 77.78 |
| TraesCS1D01G366300.1 | Wheat | nucleus | 81.51 | 77.78 |
| TraesCS1D01G373800.1 | Wheat | nucleus | 81.51 | 77.78 |
| TraesCS1D01G373900.1 | Wheat | nucleus | 81.51 | 77.78 |
| TraesCS5D01G020000.1 | Wheat | nucleus | 83.56 | 77.71 |
| TraesCS3B01G390300.1 | Wheat | nucleus | 71.23 | 77.61 |
| TraesCS6D01G040200.1 | Wheat | nucleus | 76.71 | 77.24 |
| TraesCS1B01G378300.1 | Wheat | nucleus | 80.82 | 77.12 |
| TraesCS1B01G386500.1 | Wheat | nucleus | 80.82 | 77.12 |
| TraesCS1B01G386600.1 | Wheat | nucleus | 80.82 | 77.12 |
| TraesCS6D01G326800.1 | Wheat | nucleus, unclear | 80.82 | 76.62 |
| TraesCSU01G081100.1 | Wheat | nucleus | 80.14 | 75.97 |
| HORVU6Hr1G005950.2 | Barley | nucleus | 79.45 | 74.84 |
| TraesCS1D01G232900.1 | Wheat | nucleus | 80.14 | 74.52 |
| HORVU7Hr1G110130.1 | Barley | nucleus | 59.59 | 73.73 |
| HORVU6Hr1G008320.1 | Barley | nucleus | 78.77 | 73.25 |
| HORVU1Hr1G072190.4 | Barley | nucleus | 87.67 | 72.73 |
| HORVU1Hr1G091370.1 | Barley | nucleus | 78.08 | 71.7 |
| HORVU4Hr1G009040.2 | Barley | nucleus | 84.25 | 71.51 |
| HORVU7Hr1G110330.2 | Barley | nucleus | 58.22 | 71.43 |
| HORVU7Hr1G110190.1 | Barley | nucleus | 64.38 | 71.21 |
| HORVU6Hr1G015760.1 | Barley | nucleus, plastid | 78.77 | 70.55 |
| HORVU3Hr1G013530.1 | Barley | nucleus | 78.77 | 70.12 |
| TraesCS5D01G393900.1 | Wheat | nucleus | 78.77 | 70.12 |
| HORVU7Hr1G110170.1 | Barley | nucleus | 77.4 | 69.33 |
| HORVU4Hr1G070240.1 | Barley | nucleus | 78.77 | 69.28 |
| HORVU2Hr1G077630.1 | Barley | nucleus | 84.93 | 68.51 |
| Solyc10g044580.1.1 | Tomato | nucleus | 63.01 | 68.15 |
| HORVU1Hr1G058500.1 | Barley | nucleus | 84.93 | 67.76 |
| HORVU4Hr1G073130.1 | Barley | nucleus, plastid | 84.25 | 67.21 |
| HORVU3Hr1G013680.1 | Barley | nucleus | 78.08 | 67.06 |
| HORVU1Hr1G085540.1 | Barley | nucleus | 82.19 | 67.04 |
| HORVU1Hr1G078480.6 | Barley | nucleus | 82.19 | 66.67 |
| HORVU1Hr1G078530.3 | Barley | nucleus | 82.19 | 66.67 |
| HORVU6Hr1G006110.1 | Barley | nucleus, plastid | 52.74 | 65.81 |
| HORVU7Hr1G110090.1 | Barley | nucleus, plastid | 77.4 | 65.32 |
| HORVU6Hr1G083110.1 | Barley | nucleus | 75.34 | 64.33 |
| VIT_06s0004g04240.t01 | Wine grape | nucleus | 93.84 | 59.57 |
| Os08t0490900-00 | Rice | nucleus | 84.93 | 58.49 |
| HORVU1Hr1G056530.1 | Barley | nucleus, plastid | 84.25 | 58.29 |
| HORVU5Hr1G094500.1 | Barley | nucleus, plastid | 84.25 | 58.02 |
| HORVU3Hr1G015810.1 | Barley | nucleus, plastid | 82.88 | 57.89 |
| HORVU3Hr1G086580.1 | Barley | nucleus, plastid | 69.18 | 54.89 |
| HORVU3Hr1G086610.2 | Barley | nucleus | 76.71 | 53.33 |
| Zm00001d048491_P001 | Maize | plastid | 85.62 | 52.52 |
| GSMUA_Achr6P33320_001 | Banana | nucleus | 73.29 | 51.69 |
| HORVU1Hr1G066130.1 | Barley | nucleus | 85.62 | 51.44 |
| TraesCS6B01G081700.1 | Wheat | nucleus | 54.11 | 48.17 |
| TraesCS6D01G063200.1 | Wheat | nucleus | 54.79 | 40.4 |
| TraesCS6A01G061400.1 | Wheat | nucleus | 54.11 | 37.8 |
| Solyc06g074750.1.1 | Tomato | mitochondrion, nucleus | 50.68 | 26.15 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:12.1.3 | GO:GO:0000786 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005694 | GO:GO:0046982 | InterPro:Histone-fold | InterPro:Histone_H2A/H2B/H3 | InterPro:Histone_H2B | InterPro:IPR009072 |
| UniProt:K4C9U5 | PFAM:PF00125 | PRINTS:PR00621 | ScanProsite:PS00357 | PANTHER:PTHR23428 | PANTHER:PTHR23428:SF97 |
| SMART:SM00427 | SUPFAM:SSF47113 | EnsemblPlantsGene:Solyc06g075800.1 | EnsemblPlants:Solyc06g075800.1.1 | UniParc:UPI0002766D51 | SEG:seg |
Description
Histone H2B [Source:UniProtKB/TrEMBL;Acc:K4C9U5]
Coordinates
chr6:+:47103632..47104072
Molecular Weight (calculated)
16096.7 Da
IEP (calculated)
10.796
GRAVY (calculated)
-0.744
Length
146 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPKAEKKPA EKKPAEEKKS TVAEKAPAEK KPKAGKKLPK DAASSEKKKK KAKKSVETYK IYIFKVLKQV HPDIGISSKA MGIMNSFIND IFEKLAQESS
101: RLARYNKKPT ITSREIQTAV RLVLPGELAK HAVSEGTKAV TKFTSS
101: RLARYNKKPT ITSREIQTAV RLVLPGELAK HAVSEGTKAV TKFTSS
001: MAPKAAEKKP AEKKPAGKAP AEKLPKAEKK ISKDAGGSEK KKKKSKKSVE TYKIYIFKVL KQVHPDVGIS GKAMGIMNSF INDIFEKLAQ ESSKLARYNK
101: KPTITSREIQ TAVRLVLPGE LAKHAVSEGT KAVTKFTS
101: KPTITSREIQ TAVRLVLPGE LAKHAVSEGT KAVTKFTS
Arabidopsis Description
Histone H2B.4 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUS0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.