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Wheat
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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: unclear, nucleus

Predictor Summary:
  • nucleus 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus, unclear
Any Predictor:mitochondrion, nucleus
MultiLoc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
 unclear: 25769308
msms PMID: 25769308 doi
AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré
INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS5B01G058200.1 Wheat nucleus 99.37 99.37
TraesCS5A01G051900.1 Wheat nucleus 95.6 97.44
TraesCS2D01G310800.1 Wheat nucleus 93.08 97.37
TraesCS1B01G244900.1 Wheat nucleus 91.82 96.05
TraesCS1B01G245300.1 Wheat nucleus 91.82 96.05
TraesCS7B01G394800.1 Wheat nucleus 58.49 95.88
TraesCS4B01G275400.1 Wheat nucleus 91.82 94.81
TraesCS1B01G192500.1 Wheat nucleus 91.19 94.77
Zm00001d007084_P001 Maize plastid 89.94 94.08
TraesCS6B01G055300.1 Wheat nucleus 56.6 93.75
TraesCS6B01G055500.1 Wheat nucleus 56.6 93.75
TraesCS7B01G394500.1 Wheat nucleus 56.6 93.75
Zm00001d051591_P001 Maize plastid 90.57 93.51
GSMUA_Achr9P04060_001 Banana nucleus 68.55 93.16
TraesCS4B01G054200.1 Wheat nucleus 88.68 92.76
TraesCS1B01G416600.1 Wheat nucleus 88.05 92.72
TraesCS5B01G389100.1 Wheat nucleus 87.42 91.45
TraesCS4B01G204400.1 Wheat nucleus 85.53 91.28
TraesCS6B01G084900.1 Wheat nucleus 88.05 90.91
TraesCS1B01G386200.1 Wheat nucleus 87.42 90.85
TraesCS1B01G386700.1 Wheat nucleus 87.42 90.85
TraesCS7B01G394700.1 Wheat nucleus 78.62 90.58
TraesCS1B01G386400.1 Wheat nucleus 86.79 90.2
TraesCS1B01G386500.1 Wheat nucleus 86.79 90.2
TraesCS7B01G394600.1 Wheat nucleus 77.99 89.86
TraesCS6B01G048500.1 Wheat unclear 81.76 89.66
TraesCS1B01G357600.1 Wheat nucleus 81.13 89.58
TraesCS1B01G378300.1 Wheat nucleus 86.16 89.54
TraesCS1B01G386600.1 Wheat nucleus 86.16 89.54
TraesCS6B01G376900.1 Wheat nucleus 85.53 89.47
TraesCS7B01G394100.1 Wheat nucleus 77.36 89.13
TraesCS7B01G394400.1 Wheat nucleus 77.36 89.13
TraesCS6B01G048800.1 Wheat nucleus 80.5 88.89
TraesCS6B01G049100.1 Wheat nucleus 80.5 88.89
TraesCS6B01G049300.1 Wheat nucleus 80.5 88.89
TraesCS6B01G116000.1 Wheat nucleus 75.47 88.89
KRH26542 Soybean nucleus 74.84 88.81
TraesCS7B01G394900.1 Wheat nucleus 79.25 88.73
TraesCS1B01G294500.1 Wheat nucleus 82.39 88.51
KRH22818 Soybean nucleus 73.58 87.97
TraesCS3B01G390000.1 Wheat nucleus 74.84 87.5
TraesCS6B01G082600.1 Wheat nucleus 79.25 87.5
TraesCS3B01G114400.1 Wheat nucleus 74.21 87.41
TraesCS3B01G114600.1 Wheat nucleus 74.21 87.41
TraesCS3B01G390100.1 Wheat nucleus 74.21 87.41
KRH19721 Soybean nucleus 75.47 86.33
PGSC0003DMT400077939 Potato nucleus 79.25 86.3
PGSC0003DMT400043578 Potato nucleus 76.1 85.82
Solyc06g075800.1.1 Tomato nucleus 78.62 85.62
TraesCS7B01G405800.1 Wheat nucleus 74.84 85.61
Bra007018.1-P Field mustard nucleus 74.21 85.51
KRG95819 Soybean nucleus 74.21 85.51
KRH67549 Soybean nucleus 74.21 85.51
KRH34681 Soybean nucleus 73.58 85.4
Solyc03g071620.1.1 Tomato nucleus 75.47 85.11
AT2G37470.1 Thale cress nucleus 73.58 84.78
Bra039810.1-P Field mustard nucleus 73.58 84.78
PGSC0003DMT400070382 Potato nucleus 76.73 84.72
KRG92106 Soybean nucleus 72.33 84.56
VIT_06s0004g04230.t01 Wine grape nucleus 77.36 84.25
AT3G46030.1 Thale cress nucleus 76.73 84.14
VIT_13s0019g05370.t01 Wine grape nucleus 76.73 84.14
AT5G59910.1 Thale cress nucleus 79.25 84.0
GSMUA_Achr2P19080_001 Banana nucleus 75.47 83.92
Bra006685.1-P Field mustard nucleus 74.21 83.69
Bra002520.1-P Field mustard nucleus 78.62 83.33
Bra003150.1-P Field mustard nucleus 72.33 83.33
Solyc11g007920.1.1 Tomato nucleus 75.47 83.33
KRH29833 Soybean nucleus 74.84 83.22
Bra038267.1-P Field mustard nucleus 71.7 83.21
KRH29831 Soybean nucleus 77.36 83.11
KRH29832 Soybean nucleus 77.36 83.11
KRH29836 Soybean nucleus 77.36 83.11
Bra020275.1-P Field mustard nucleus 74.21 83.1
PGSC0003DMT400070383 Potato nucleus 74.21 83.1
PGSC0003DMT400060096 Potato nucleus 76.73 82.99
AT2G28720.1 Thale cress nucleus 78.62 82.78
AT3G45980.1 Thale cress nucleus 77.99 82.67
AT3G53650.1 Thale cress nucleus 71.7 82.61
AT5G02570.1 Thale cress nucleus 68.55 82.58
KRH24831 Soybean nucleus 77.36 82.55
KRH24833 Soybean nucleus 77.36 82.55
VIT_06s0004g04250.t01 Wine grape nucleus 76.73 82.43
Solyc06g074790.1.1 Tomato nucleus 73.58 82.39
PGSC0003DMT400074994 Potato nucleus 76.1 82.31
Solyc05g055440.1.1 Tomato nucleus 76.1 82.31
Solyc06g005390.1.1 Tomato nucleus 76.1 82.31
Bra002436.1-P Field mustard nucleus 72.96 82.27
PGSC0003DMT400022074 Potato nucleus 74.21 81.94
PGSC0003DMT400022099 Potato nucleus 74.21 81.94
Solyc11g007930.1.1 Tomato nucleus 71.07 81.88
KRH24830 Soybean nucleus 76.73 81.88
Solyc11g066430.1.1 Tomato nucleus 71.7 81.43
Bra011930.1-P Field mustard nucleus 76.1 81.21
Bra035677.1-P Field mustard nucleus 76.1 81.21
AT1G07790.1 Thale cress nucleus 75.47 81.08
PGSC0003DMT400018456 Potato nucleus 72.33 80.99
VIT_06s0004g04300.t01 Wine grape nucleus 77.36 80.92
AT5G22880.1 Thale cress nucleus 73.58 80.69
Solyc12g013510.1.1 Tomato nucleus 70.44 80.58
Bra006639.1-P Field mustard nucleus 72.96 80.56
PGSC0003DMT400018455 Potato nucleus 72.33 80.42
Solyc06g074780.1.1 Tomato nucleus 72.33 80.42
HORVU1Hr1G058500.1 Barley nucleus 92.45 80.33
AT3G09480.1 Thale cress nucleus 63.52 80.16
Solyc02g038690.1.1 Tomato nucleus 67.3 79.85
PGSC0003DMT400001108 Potato nucleus 71.07 79.58
Bra000483.1-P Field mustard nucleus 76.73 78.71
GSMUA_Achr7P15260_001 Banana nucleus 74.21 77.63
TraesCS3B01G390300.1 Wheat nucleus 64.78 76.87
PGSC0003DMT400074020 Potato nucleus 63.52 74.81
CDX71015 Canola nucleus 27.67 66.67
Solyc10g044580.1.1 Tomato nucleus 54.09 63.7
VIT_06s0004g04240.t01 Wine grape nucleus 78.62 54.35
TraesCS6B01G081700.1 Wheat nucleus 55.35 53.66
GSMUA_Achr6P33320_001 Banana nucleus 66.04 50.72
TraesCS4B01G002800.1 Wheat nucleus 45.28 23.45
PGSC0003DMT400074018 Potato nucleus 54.72 22.83
Protein Annotations
Gene3D:1.10.20.10MapMan:12.1.3GO:GO:0000786GO:GO:0003674GO:GO:0003676GO:GO:0003677
GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0046982
InterPro:Histone-foldInterPro:Histone_H2A/H2B/H3InterPro:Histone_H2BInterPro:IPR009072PFAM:PF00125PRINTS:PR00621
ScanProsite:PS00357PANTHER:PTHR23428PANTHER:PTHR23428:SF175SMART:SM00427SUPFAM:SSF47113EnsemblPlantsGene:TraesCS5B01G064900
EnsemblPlants:TraesCS5B01G064900.1SEG:seg::::
Description
No Description!
Coordinates
chr5B:-:72258282..72258761
Molecular Weight (calculated)
17118.9 Da
IEP (calculated)
10.821
GRAVY (calculated)
-0.657
Length
159 amino acids
Sequence
(BLAST)
001: MAPKAEKKPA AKKPAEEEPA AEKAAEKAPA AKKPKAEKRL PAGKTASKEA GGEAKTRGRK KGSKAKKSVE TYKIYIFKVL KQVHPDIGIS SKAMSIMNSF
101: INDIFEKLAA EAAKLARYNK KPTITSREIQ TSVRLVLPGE LAKHAVSEGT KAVTKFTSS
Best Arabidopsis Sequence Match ( AT1G07790.1 )
(BLAST)
001: MAPRAEKKPA EKKTAAERPV EENKAAEKAP AEKKPKAGKK LPPKEAGDKK KKRSKKNVET YKIYIFKVLK QVHPDIGISS KAMGIMNSFI NDIFEKLAQE
101: SSKLARYNKK PTITSREIQT AVRLVLPGEL AKHAVSEGTK AVTKFTSS
Arabidopsis Description
HTB1Histone H2B.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQQ4]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.