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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 6
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400074020 Potato nucleus 25.46 71.85
GSMUA_Achr8P20900_001 Banana nucleus 11.55 66.67
GSMUA_Achr9P04060_001 Banana nucleus 20.47 66.67
PGSC0003DMT400043578 Potato nucleus 24.67 66.67
PGSC0003DMT400070382 Potato nucleus 24.67 65.28
GSMUA_Achr10P... Banana nucleus 11.29 65.15
TraesCS7B01G394800.1 Wheat nucleus 16.54 64.95
TraesCS3A01G075800.1 Wheat nucleus 16.27 64.58
TraesCS6B01G055300.1 Wheat nucleus 16.27 64.58
TraesCS6B01G055500.1 Wheat nucleus 16.27 64.58
Os05t0460475-00 Rice nucleus 17.85 64.15
PGSC0003DMT400070383 Potato nucleus 23.88 64.08
PGSC0003DMT400022099 Potato nucleus 24.15 63.89
PGSC0003DMT400018455 Potato nucleus 23.88 63.64
PGSC0003DMT400018456 Potato nucleus 23.62 63.38
PGSC0003DMT400060096 Potato nucleus 24.41 63.27
PGSC0003DMT400022074 Potato nucleus 23.88 63.19
Bra006685.1-P Field mustard nucleus 23.36 63.12
CDX71064 Canola nucleus 23.36 63.12
CDX88732 Canola nucleus 23.36 63.12
PGSC0003DMT400077939 Potato nucleus 24.15 63.01
TraesCS7B01G394500.1 Wheat nucleus 15.75 62.5
TraesCS6D01G046500.1 Wheat nucleus 10.76 62.12
VIT_13s0019g05370.t01 Wine grape nucleus 23.62 62.07
Bra002436.1-P Field mustard nucleus 22.83 61.7
CDY26964 Canola nucleus 22.83 61.7
KRH29833 Soybean nucleus 23.1 61.54
CDX71019 Canola nucleus 22.83 61.27
TraesCS2A01G312400.1 Wheat nucleus 18.9 61.02
GSMUA_Achr2P19080_001 Banana nucleus 22.83 60.84
KRH29831 Soybean nucleus 23.62 60.81
KRH29832 Soybean nucleus 23.62 60.81
KRH29836 Soybean nucleus 23.62 60.81
HORVU6Hr1G015790.1 Barley nucleus 21.52 60.74
TraesCS6A01G086400.1 Wheat nucleus 21.52 60.74
TraesCS6B01G116000.1 Wheat nucleus 21.52 60.74
TraesCSU01G077200.1 Wheat nucleus 21.52 60.74
TraesCSU01G077400.1 Wheat nucleus 21.52 60.74
AT5G22880.1 Thale cress nucleus 23.1 60.69
Bra006639.1-P Field mustard nucleus 22.83 60.42
CDX88779 Canola nucleus 22.83 60.42
KRH24830 Soybean nucleus 23.62 60.4
KRH24831 Soybean nucleus 23.62 60.4
KRH24833 Soybean nucleus 23.62 60.4
TraesCS3A01G357500.1 Wheat nucleus 21.52 60.29
TraesCS3D01G075900.1 Wheat nucleus 21.52 60.29
TraesCS3D01G351300.1 Wheat nucleus 21.52 60.29
TraesCS3D01G351400.1 Wheat nucleus 21.52 60.29
TraesCS6A01G040500.1 Wheat nucleus 21.52 60.29
TraesCS6D01G046200.1 Wheat nucleus, unclear 21.52 60.29
TraesCS6D01G046600.1 Wheat nucleus 21.52 60.29
TraesCS3A01G357400.1 Wheat nucleus 21.78 60.14
TraesCS3B01G114600.1 Wheat nucleus 21.26 60.0
TraesCS3B01G390100.1 Wheat nucleus 21.26 60.0
TraesCS6A01G086200.1 Wheat nucleus 21.26 60.0
TraesCS7B01G405800.1 Wheat nucleus 21.78 59.71
TraesCS3B01G390000.1 Wheat nucleus 21.26 59.56
TraesCS3D01G099000.1 Wheat nucleus 21.26 59.56
TraesCS3B01G114400.1 Wheat nucleus 21.0 59.26
EES18353 Sorghum nucleus 22.83 59.18
PGSC0003DMT400074994 Potato nucleus 22.83 59.18
PGSC0003DMT400001108 Potato nucleus 22.05 59.15
CDX92329 Canola nucleus 22.31 59.03
HORVU0Hr1G006420.1 Barley nucleus 21.26 58.7
HORVU3Hr1G034060.1 Barley nucleus 21.26 58.7
TraesCS3D01G342400.1 Wheat nucleus 21.26 58.7
TraesCS7A01G490900.1 Wheat nucleus 21.26 58.7
TraesCS7A01G491000.1 Wheat nucleus 21.26 58.7
TraesCS7B01G394400.1 Wheat nucleus 21.26 58.7
TraesCS7B01G394700.1 Wheat nucleus 21.26 58.7
TraesCS4D01G205300.1 Wheat nucleus 21.78 58.45
EES00304 Sorghum nucleus 22.83 58.39
Os01t0839500-00 Rice nucleus 21.26 58.27
OQU92807 Sorghum nucleus 22.57 58.11
TraesCS1B01G294500.1 Wheat nucleus 22.57 58.11
TraesCSU01G169300.1 Wheat nucleus 22.57 58.11
TraesCSU01G169400.1 Wheat nucleus 22.57 58.11
TraesCSU01G169500.1 Wheat nucleus 22.57 58.11
TraesCSU01G169700.1 Wheat nucleus 22.57 58.11
TraesCSU01G169800.1 Wheat nucleus 22.57 58.11
TraesCSU01G169900.1 Wheat nucleus 22.57 58.11
TraesCSU01G170400.1 Wheat nucleus 22.57 58.11
TraesCSU01G170500.1 Wheat nucleus 22.57 58.11
TraesCSU01G170600.1 Wheat nucleus 22.57 58.11
TraesCSU01G170700.1 Wheat nucleus 22.57 58.11
TraesCSU01G170900.1 Wheat nucleus 22.57 58.11
TraesCSU01G171000.1 Wheat nucleus 22.57 58.11
TraesCSU01G171100.1 Wheat nucleus 22.57 58.11
EES00399 Sorghum nucleus 22.83 58.0
TraesCS7B01G394100.1 Wheat nucleus 21.0 57.97
TraesCS7B01G394600.1 Wheat nucleus 21.0 57.97
Os03t0279000-00 Rice nucleus 23.1 57.89
HORVU7Hr1G110290.1 Barley nucleus 15.49 57.84
TraesCS7A01G491100.1 Wheat extracellular, nucleus, unclear 21.52 57.75
TraesCS7B01G394900.1 Wheat nucleus 21.52 57.75
TraesCS7D01G477300.1 Wheat nucleus 21.52 57.75
EES00305 Sorghum nucleus 22.57 57.72
TraesCS4A01G099900.1 Wheat nucleus 22.57 57.72
Zm00001d039821_P001 Maize plastid 22.57 57.72
TraesCS7D01G485700.1 Wheat nucleus 21.0 57.55
Zm00001d011236_P001 Maize plastid 22.57 57.33
TraesCS6A01G040200.1 Wheat nucleus 20.73 57.25
TraesCS5A01G384300.1 Wheat nucleus 22.83 57.24
TraesCS5B01G389100.1 Wheat nucleus 22.83 57.24
Zm00001d007084_P001 Maize plastid 22.83 57.24
TraesCS1A01G190400.1 Wheat nucleus 21.0 57.14
TraesCS4B01G204400.1 Wheat nucleus 22.31 57.05
TraesCS7D01G477400.1 Wheat nucleus 21.26 57.04
TraesCS1B01G357600.1 Wheat nucleus 21.52 56.94
EES03855 Sorghum nucleus 20.47 56.93
Zm00001d012423_P001 Maize plastid 20.47 56.93
Zm00001d042930_P001 Maize plastid 20.47 56.93
TraesCS6A01G040400.1 Wheat nucleus 20.73 56.83
Zm00001d044247_P001 Maize plastid 22.05 56.76
TraesCS4A01G030500.1 Wheat nucleus 21.0 56.74
EES15460 Sorghum nucleus 22.57 56.58
Os05t0574300-00 Rice nucleus 22.57 56.58
TraesCS2D01G310800.1 Wheat nucleus 22.57 56.58
TraesCS3D01G088900.1 Wheat nucleus 22.57 56.58
TraesCS4A01G260400.1 Wheat nucleus 22.57 56.58
TraesCS4D01G054200.1 Wheat nucleus 22.57 56.58
Zm00001d051591_P001 Maize plastid 22.83 56.49
TraesCS6D01G046400.1 Wheat nucleus 20.73 56.43
EES15092 Sorghum nucleus 22.31 56.29
TraesCS3A01G088800.1 Wheat nucleus 22.31 56.29
TraesCS3A01G102500.1 Wheat nucleus 21.26 56.25
TraesCS6A01G034500.1 Wheat nucleus 21.26 56.25
TraesCS6A01G035000.1 Wheat nucleus 21.26 56.25
TraesCS6B01G049300.1 Wheat nucleus 21.26 56.25
EER96770 Sorghum nucleus 22.57 56.21
Os01t0149600-01 Rice nucleus 22.57 56.21
Os01t0152900-00 Rice nucleus 22.57 56.21
HORVU6Hr1G087190.1 Barley nucleus 22.05 56.0
TraesCS1D01G396600.1 Wheat golgi, nucleus, unclear 22.05 56.0
Zm00001d025913_P001 Maize plastid 22.05 56.0
Zm00001d050100_P001 Maize plastid 22.05 56.0
GSMUA_Achr7P15260_001 Banana nucleus 22.31 55.92
TraesCS1A01G228700.1 Wheat nucleus 22.31 55.92
TraesCS1B01G244900.1 Wheat nucleus 22.31 55.92
TraesCS1B01G245300.1 Wheat nucleus 22.31 55.92
TraesCS4B01G054200.1 Wheat nucleus 22.31 55.92
Zm00001d005789_P001 Maize plastid 22.31 55.92
EER97675 Sorghum nucleus 22.05 55.63
TraesCS1B01G416600.1 Wheat nucleus 22.05 55.63
Zm00001d020580_P001 Maize plastid 22.05 55.63
HORVU1Hr1G049920.1 Barley nucleus 22.31 55.56
OQU87075 Sorghum nucleus 22.31 55.56
Os01t0152300-00 Rice nucleus 22.31 55.56
Os01t0153100-00 Rice nucleus 22.31 55.56
TraesCS1B01G192500.1 Wheat nucleus 22.31 55.56
TraesCS6B01G048800.1 Wheat nucleus 21.0 55.56
TraesCS6B01G049100.1 Wheat nucleus 21.0 55.56
TraesCS6B01G082600.1 Wheat nucleus 21.0 55.56
Os01t0153300-00 Rice nucleus 22.57 55.48
TraesCS1D01G233300.1 Wheat nucleus 22.05 55.26
TraesCS4B01G275400.1 Wheat nucleus 22.31 55.19
TraesCS6B01G048500.1 Wheat unclear 21.0 55.17
TraesCS1A01G388600.1 Wheat nucleus 22.05 54.9
TraesCS1D01G194600.1 Wheat nucleus 22.05 54.9
EES07386 Sorghum nucleus 22.31 54.84
Solyc10g044580.1.1 Tomato nucleus 19.42 54.81
TraesCS5D01G020000.1 Wheat nucleus 22.57 54.78
TraesCS5B01G058200.1 Wheat nucleus 22.83 54.72
TraesCS5B01G064900.1 Wheat nucleus, unclear 22.83 54.72
Zm00001d032070_P001 Maize plastid 21.52 54.67
TraesCS4A01G030400.1 Wheat nucleus 22.05 54.55
TraesCS5A01G051900.1 Wheat nucleus 22.31 54.49
TraesCS6D01G040200.1 Wheat nucleus 20.73 54.48
TraesCS6D01G040600.1 Wheat nucleus 20.73 54.48
TraesCS1A01G361600.1 Wheat nucleus 21.78 54.25
TraesCS1A01G367900.1 Wheat nucleus 21.78 54.25
TraesCS1A01G368000.1 Wheat nucleus 21.78 54.25
TraesCS1B01G386200.1 Wheat nucleus 21.78 54.25
TraesCS1B01G386400.1 Wheat nucleus 21.78 54.25
TraesCS1B01G386500.1 Wheat nucleus 21.78 54.25
TraesCS1B01G386600.1 Wheat nucleus 21.78 54.25
TraesCS1B01G386700.1 Wheat nucleus 21.78 54.25
TraesCS1D01G366300.1 Wheat nucleus 21.78 54.25
TraesCS1D01G373800.1 Wheat nucleus 21.78 54.25
TraesCS1D01G373900.1 Wheat nucleus 21.78 54.25
HORVU7Hr1G110330.2 Barley nucleus 16.8 53.78
HORVU3Hr1G013530.1 Barley nucleus 23.1 53.66
TraesCS1B01G378300.1 Wheat nucleus 21.52 53.59
TraesCS6B01G376900.1 Wheat nucleus 21.26 53.29
TraesCS6B01G084900.1 Wheat nucleus 21.52 53.25
TraesCS5D01G393900.1 Wheat nucleus 22.83 53.05
TraesCS3D01G351500.1 Wheat nucleus 17.06 52.85
TraesCS6D01G326800.1 Wheat nucleus, unclear 21.26 52.6
TraesCSU01G081100.1 Wheat nucleus 21.26 52.6
HORVU6Hr1G005950.2 Barley nucleus 21.26 52.26
TraesCS3B01G390300.1 Wheat nucleus 18.37 52.24
HORVU6Hr1G008320.1 Barley nucleus 21.52 52.23
TraesCS1D01G232900.1 Wheat nucleus 21.52 52.23
HORVU7Hr1G110130.1 Barley nucleus 16.01 51.69
HORVU7Hr1G110190.1 Barley nucleus 17.85 51.52
HORVU1Hr1G091370.1 Barley nucleus 21.26 50.94
HORVU6Hr1G015760.1 Barley nucleus, plastid 21.78 50.92
HORVU4Hr1G009040.2 Barley nucleus 22.83 50.58
HORVU7Hr1G110170.1 Barley nucleus 21.52 50.31
HORVU1Hr1G072190.4 Barley nucleus 23.1 50.0
HORVU3Hr1G013680.1 Barley nucleus 22.31 50.0
HORVU4Hr1G070240.1 Barley nucleus 21.78 50.0
HORVU2Hr1G077630.1 Barley nucleus 23.36 49.17
HORVU1Hr1G058500.1 Barley nucleus 23.1 48.09
HORVU4Hr1G073130.1 Barley nucleus, plastid 23.1 48.09
HORVU6Hr1G083110.1 Barley nucleus 21.52 47.95
HORVU6Hr1G006110.1 Barley nucleus, plastid 14.7 47.86
HORVU1Hr1G078480.6 Barley nucleus 22.57 47.78
HORVU1Hr1G085540.1 Barley nucleus 22.31 47.49
HORVU7Hr1G110090.1 Barley nucleus, plastid 21.52 47.4
HORVU1Hr1G078530.3 Barley nucleus 22.05 46.67
HORVU3Hr1G015810.1 Barley nucleus, plastid 24.93 45.45
Os08t0490900-00 Rice nucleus 24.15 43.4
HORVU5Hr1G094500.1 Barley nucleus, plastid 23.88 42.92
HORVU3Hr1G086580.1 Barley nucleus, plastid 19.95 41.3
HORVU1Hr1G056530.1 Barley nucleus, plastid 22.57 40.76
HORVU1Hr1G066130.1 Barley nucleus 25.98 40.74
HORVU3Hr1G086610.2 Barley nucleus 22.31 40.48
GSMUA_Achr6P33320_001 Banana nucleus 21.78 40.1
Zm00001d048491_P001 Maize plastid 24.93 39.92
TraesCS6B01G081700.1 Wheat nucleus 14.7 34.15
TraesCS6D01G063200.1 Wheat nucleus 14.44 27.78
TraesCS6A01G061400.1 Wheat nucleus 14.17 25.84
PGSC0003DMT400018366 Potato mitochondrion, nucleus 15.75 21.98
Protein Annotations
Gene3D:1.10.20.10MapMan:12.1.3GO:GO:0000786GO:GO:0003674GO:GO:0003676GO:GO:0003677
GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634
GO:GO:0005694GO:GO:0046982InterPro:Histone-foldInterPro:Histone_H2A/H2B/H3InterPro:Histone_H2BInterPro:IPR009072
UniProt:M1CT05PFAM:PF00125EnsemblPlantsGene:PGSC0003DMG400028770PGSC:PGSC0003DMG400028770EnsemblPlants:PGSC0003DMT400074018PRINTS:PR00621
PANTHER:PTHR23428PANTHER:PTHR23428:SF155SMART:SM00427SUPFAM:SSF47113UniParc:UPI000294D77B:
Description
Histone H2B [Source:PGSC_GENE;Acc:PGSC0003DMG400028770]
Coordinates
chr10:-:33311747..33319944
Molecular Weight (calculated)
43899.2 Da
IEP (calculated)
10.240
GRAVY (calculated)
-0.993
Length
381 amino acids
Sequence
(BLAST)
001: MDSRRTTERI NDLDLDRLKS QNPKDKNPRQ TGDGMEQWAH HRHGWNREID DGWKDRDREW RDHGTNWNER DGDKEEYVPP HERQNPKEQM ADPENFNTED
101: ILGRILNKLE GSEKVEKLKF WENGSWRDKG PVGDSPKSNS PKAPSDRPSA PYFLKLFCNI RRATFSSPSG FGDPPIGFGH RRPMIIFKSF YFGTFGEPDL
201: ARQMDSVREF YSAYGKLVPK GKKKSSAFKP VDFVVIRGKK VKCSCMEINE KPTKKKSSAE KAPTTATEKS KSGKKLPKDA TRDKKIKGLK NYVNTYKIYI
301: FKVLKQVHPD IEIASKAMGI MNNFINDIFE RLAEEFSRLS RYNRKPTITF RVIQSSLQLV LPSELAKHIV SEGTKGGCQI H
Best Arabidopsis Sequence Match ( AT1G07790.1 )
(BLAST)
001: MAPRAEKKPA EKKTAAERPV EENKAAEKAP AEKKPKAGKK LPPKEAGDKK KKRSKKNVET YKIYIFKVLK QVHPDIGISS KAMGIMNSFI NDIFEKLAQE
101: SSKLARYNKK PTITSREIQT AVRLVLPGEL AKHAVSEGTK AVTKFTSS
Arabidopsis Description
HTB1Histone H2B.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQQ4]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.