CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
vacuole 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, vacuole
BaCelLo:	nucleus
EpiLoc:	vacuole
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra002436.1-P	Field mustard	nucleus	100.0	100.0
CDX71019	Canola	nucleus	97.16	96.48
CDX92329	Canola	nucleus	97.16	95.14
CDX88779	Canola	nucleus	96.45	94.44
AT5G22880.1	Thale cress	nucleus	95.74	93.1
CDX71064	Canola	nucleus	92.91	92.91
CDX88732	Canola	nucleus	92.91	92.91
CDX86049	Canola	nucleus	84.4	90.15
Solyc02g038690.1.1	Tomato	nucleus	84.4	88.81
PGSC0003DMT400070383	Potato	nucleus	89.36	88.73
CDX99134	Canola	nucleus	85.11	87.59
PGSC0003DMT400022099	Potato	nucleus	89.36	87.5
Solyc12g013510.1.1	Tomato	nucleus	85.82	87.05
Solyc11g007930.1.1	Tomato	nucleus	85.11	86.96
PGSC0003DMT400022074	Potato	nucleus	88.65	86.81
CDY09241	Canola	nucleus	86.52	85.92
KRH29831	Soybean	nucleus	90.07	85.81
KRH29832	Soybean	nucleus	90.07	85.81
KRH29836	Soybean	nucleus	90.07	85.81
CDY30852	Canola	nucleus	83.69	85.51
CDY31584	Canola	nucleus	90.78	85.33
CDX80214	Canola	nucleus	90.78	85.33
KRH29833	Soybean	nucleus	86.52	85.31
KRH24831	Soybean	nucleus	90.07	85.23
KRH24833	Soybean	nucleus	90.07	85.23
CDY15776	Canola	nucleus	89.36	85.14
VIT_13s0019g05370.t01	Wine grape	nucleus	87.23	84.83
KRH24830	Soybean	nucleus	89.36	84.56
CDY71843	Canola	nucleus	89.36	84.56
CDY52745	Canola	nucleus	81.56	83.94
CDX95762	Canola	nucleus	88.65	82.78
CDY72471	Canola	nucleus	89.36	82.35
CDX77199	Canola	nucleus	89.36	81.82
CDX83300	Canola	nucleus	88.65	80.65
PGSC0003DMT400074020	Potato	nucleus	73.76	77.04
CDX71015	Canola	nucleus	31.21	66.67
Solyc10g044580.1.1	Tomato	nucleus	62.41	65.19
CDX93584	Canola	nucleus	49.65	27.24
PGSC0003DMT400074018	Potato	nucleus	61.7	22.83
CDX95087	Canola	nucleus	49.65	21.94

Protein Annotations

Gene3D:1.10.20.10	MapMan:12.1.3	GO:A0A078GP04	UniProt:A0A078GP04	EnsemblPlants:CDY26964	ProteinID:CDY26964
ProteinID:CDY26964.1	GO:GO:0000786	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005694
GO:GO:0046982	EnsemblPlantsGene:GSBRNA2T00036718001	InterPro:Histone-fold	InterPro:Histone_H2A/H2B/H3	InterPro:Histone_H2B	InterPro:IPR009072
PFAM:PF00125	PRINTS:PR00621	ScanProsite:PS00357	PANTHER:PTHR23428	PANTHER:PTHR23428:SF97	SMART:SM00427
SUPFAM:SSF47113	UniParc:UPI0000E646DC	SEG:seg	:	:	:

Description

BnaC09g36190DHistone H2B [Source:UniProtKB/TrEMBL;Acc:A0A078GP04]

Coordinates

chrLK032197:-:348702..349323

Molecular Weight (calculated)

15356.9 Da

IEP (calculated)

10.825

GRAVY (calculated)

-0.605

Length

141 amino acids

Sequence
(BLAST)

001: MAKADKKPAE KKPAETTTAA AAEKKPKAGK KLPKDPAVAG DKKKKRTKKS VETYKIYIFK VLKQVHPDIG ISSKAMGIMN SFINDIFEKL AGESSKLARY
101: NKKPTITSRE IQTAVRLVLP GELAKHAVSE GTKAVTKFTS S

Best Arabidopsis Sequence Match ( AT1G07790.1 )
(BLAST)

001: MAPRAEKKPA EKKTAAERPV EENKAAEKAP AEKKPKAGKK LPPKEAGDKK KKRSKKNVET YKIYIFKVLK QVHPDIGISS KAMGIMNSFI NDIFEKLAQE
101: SSKLARYNKK PTITSREIQT AVRLVLPGEL AKHAVSEGTK AVTKFTSS

Arabidopsis Description

HTB1Histone H2B.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQQ4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.