Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX93584 | Canola | nucleus | 71.47 | 88.72 |
| AT1G08170.1 | Thale cress | nucleus | 53.6 | 70.37 |
| TraesCS4A01G311600.1 | Wheat | mitochondrion | 15.99 | 57.3 |
| CDX86049 | Canola | nucleus | 21.94 | 53.03 |
| CDY09241 | Canola | nucleus | 23.51 | 52.82 |
| CDY30852 | Canola | nucleus | 22.26 | 51.45 |
| CDX99134 | Canola | nucleus | 21.94 | 51.09 |
| CDY52745 | Canola | nucleus | 21.94 | 51.09 |
| CDY15776 | Canola | nucleus | 23.51 | 50.68 |
| CDY71843 | Canola | nucleus | 23.51 | 50.34 |
| CDX80214 | Canola | nucleus | 23.51 | 50.0 |
| CDY31584 | Canola | nucleus | 23.51 | 50.0 |
| CDX95762 | Canola | nucleus | 23.51 | 49.67 |
| CDY26964 | Canola | nucleus | 21.94 | 49.65 |
| CDX71019 | Canola | nucleus | 21.94 | 49.3 |
| CDY72471 | Canola | nucleus | 23.51 | 49.02 |
| CDX88732 | Canola | nucleus | 21.63 | 48.94 |
| CDX71064 | Canola | nucleus | 21.63 | 48.94 |
| CDX77199 | Canola | nucleus | 23.51 | 48.7 |
| CDX88779 | Canola | nucleus | 21.94 | 48.61 |
| CDX83300 | Canola | nucleus | 23.51 | 48.39 |
| CDX92329 | Canola | nucleus | 21.63 | 47.92 |
| VIT_06s0061g00870.t01 | Wine grape | nucleus | 29.78 | 43.98 |
| KRH30545 | Soybean | mitochondrion, nucleus | 25.71 | 41.21 |
| KRH25129 | Soybean | nucleus | 28.53 | 40.44 |
| Os09t0570850-00 | Rice | nucleus | 19.12 | 40.13 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus, plastid | 26.02 | 39.52 |
| CDX71015 | Canola | nucleus | 8.15 | 39.39 |
| HORVU4Hr1G000750.1 | Barley | nucleus | 19.12 | 34.27 |
| PGSC0003DMT400018366 | Potato | mitochondrion, nucleus | 25.71 | 30.04 |
| Solyc06g074750.1.1 | Tomato | mitochondrion, nucleus | 25.71 | 28.98 |
| Zm00001d005322_P001 | Maize | nucleus | 22.26 | 27.1 |
| EER98531 | Sorghum | nucleus | 24.76 | 26.42 |
| TraesCS4B01G002800.1 | Wheat | nucleus | 22.26 | 23.13 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:12.1.3 | GO:A0A078E1R5 | EnsemblPlants:CDX95087 | ProteinID:CDX95087 | ProteinID:CDX95087.1 |
| GO:GO:0000786 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0046982 | EnsemblPlantsGene:GSBRNA2T00100618001 | InterPro:Histone-fold |
| InterPro:Histone_H2A/H2B/H3 | InterPro:Histone_H2B | InterPro:IPR009072 | PFAM:PF00125 | PRINTS:PR00621 | PANTHER:PTHR23428 |
| PANTHER:PTHR23428:SF50 | SMART:SM00427 | SUPFAM:SSF47113 | UniParc:UPI0004EF1779 | SEG:seg | : |
Description
BnaC05g05840D
Coordinates
chrLK031886:+:1060010..1062061
Molecular Weight (calculated)
35396.1 Da
IEP (calculated)
8.054
GRAVY (calculated)
-0.740
Length
319 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPKKSKKVV SVTKKKKVVE ETIKVTVTDG VPNVTTETDT QETQELETQD LPLSIPVEEE NVTRVEIPVD VGDDRSPPPS ETVTPASEGT VKETHKVEIP
101: VDVRDDRSPQ PPETPAPASE VPSKETHKVE EKEGNKKKKM LKKRNKNRSE VAGDEYKRYV YKVMKQVHPD LGISSKAMTV INMFMGDMFE RLAVEAAKLN
201: DYSKRRTLSS REIEAAVRLV LPGELSRHAV AEGSKAISNF VAYGAKKRYL APGAGGIFTS CSDCFLHLKE EQKPVQTAQE SACAGFTFKP LLTKVYANPP
301: PEAETMLQND ENNKESNRK
101: VDVRDDRSPQ PPETPAPASE VPSKETHKVE EKEGNKKKKM LKKRNKNRSE VAGDEYKRYV YKVMKQVHPD LGISSKAMTV INMFMGDMFE RLAVEAAKLN
201: DYSKRRTLSS REIEAAVRLV LPGELSRHAV AEGSKAISNF VAYGAKKRYL APGAGGIFTS CSDCFLHLKE EQKPVQTAQE SACAGFTFKP LLTKVYANPP
301: PEAETMLQND ENNKESNRK
001: MAPRKPKVVS VTKKKKVVEE TIKVTVTEEG DPCVITETAN DQETQDLTFS IPVGENVTTV EIPVEVPDER SLPVGENVTT VKIPVDDRDE SSPQPPETPV
101: EVRDEPSPQP PETPASKSEG TLKKTDKVEK KQENKKKKKK KKRDDLAGDE YRRYVYKVMK QVHPDLGITS KAMTVVNMFM GDMFERIAQE AARLSDYTKR
201: RTLSSREIEA AVRLVLPGEL SRHAVAEGSK AVSNFVGYDS RKR
101: EVRDEPSPQP PETPASKSEG TLKKTDKVEK KQENKKKKKK KKRDDLAGDE YRRYVYKVMK QVHPDLGITS KAMTVVNMFM GDMFERIAQE AARLSDYTKR
201: RTLSSREIEA AVRLVLPGEL SRHAVAEGSK AVSNFVGYDS RKR
Arabidopsis Description
Histone H2B.2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SGE3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.