Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
26035336
|
msms PMID:
26035336
doi
§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G311600.1 | Wheat | mitochondrion | 43.42 | 74.16 |
| HORVU4Hr1G000750.1 | Barley | nucleus | 59.87 | 51.12 |
| Os05t0460475-00 | Rice | nucleus | 30.26 | 43.4 |
| Os01t0839500-00 | Rice | nucleus | 34.87 | 38.13 |
| Os01t0153100-00 | Rice | nucleus | 37.5 | 37.25 |
| Os05t0574300-00 | Rice | nucleus | 36.84 | 36.84 |
| Os03t0279000-00 | Rice | nucleus | 36.84 | 36.84 |
| Os01t0153300-00 | Rice | nucleus | 36.84 | 36.13 |
| Os01t0149600-01 | Rice | nucleus | 36.18 | 35.95 |
| Os01t0152900-00 | Rice | nucleus | 36.18 | 35.95 |
| Zm00001d005322_P001 | Maize | nucleus | 59.87 | 34.73 |
| Os01t0152300-00 | Rice | nucleus | 34.87 | 34.64 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus, plastid | 44.08 | 31.9 |
| EER98531 | Sorghum | nucleus | 62.5 | 31.77 |
| TraesCS4B01G002800.1 | Wheat | nucleus | 63.16 | 31.27 |
| VIT_06s0061g00870.t01 | Wine grape | nucleus | 42.11 | 29.63 |
| KRH30545 | Soybean | mitochondrion, nucleus | 37.5 | 28.64 |
| KRH25129 | Soybean | nucleus | 42.11 | 28.44 |
| Os08t0490900-00 | Rice | nucleus | 36.18 | 25.94 |
| CDX93584 | Canola | nucleus | 40.13 | 23.74 |
| Bra018647.1-P | Field mustard | nucleus | 40.13 | 23.74 |
| PGSC0003DMT400018366 | Potato | mitochondrion, nucleus | 40.79 | 22.71 |
| AT1G08170.1 | Thale cress | nucleus | 36.18 | 22.63 |
| Solyc06g074750.1.1 | Tomato | mitochondrion, nucleus | 40.79 | 21.91 |
| CDX95087 | Canola | nucleus | 40.13 | 19.12 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:12.1.3 | UniProt:A0A0P0XRT5 | ProteinID:BAT09517.1 | GO:GO:0000786 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005694 | GO:GO:0046982 | InterPro:Histone-fold | InterPro:Histone_H2A/H2B/H3 |
| InterPro:Histone_H2B | InterPro:IPR009072 | EnsemblPlantsGene:Os09g0570850 | EnsemblPlants:Os09t0570850-00 | PFAM:PF00125 | PRINTS:PR00621 |
| PANTHER:PTHR23428 | PANTHER:PTHR23428:SF50 | SMART:SM00427 | SUPFAM:SSF47113 | UniParc:UPI000393A642 | SEG:seg |
Description
Similar to Histone H2B. (Os09t0570850-00)
Coordinates
chr9:-:22792228..22792931
Molecular Weight (calculated)
16784.1 Da
IEP (calculated)
10.124
GRAVY (calculated)
-0.652
Length
152 amino acids
Sequence
(BLAST)
(BLAST)
001: MDMEMVDDNK TGAAADETPP VVPLQSQETQ DPNEPKAAAA KKKKRAGHGR KRSRRRRGGA LEYGGYKRYV WRVLKQVHPD LGASAQTMDV LDMMMADMFE
101: RLADEASRLS KLSGRLTLTS REVQSAVRLV LPADLANHAI SEGTKAISNY LS
101: RLADEASRLS KLSGRLTLTS REVQSAVRLV LPADLANHAI SEGTKAISNY LS
001: MAPRKPKVVS VTKKKKVVEE TIKVTVTEEG DPCVITETAN DQETQDLTFS IPVGENVTTV EIPVEVPDER SLPVGENVTT VKIPVDDRDE SSPQPPETPV
101: EVRDEPSPQP PETPASKSEG TLKKTDKVEK KQENKKKKKK KKRDDLAGDE YRRYVYKVMK QVHPDLGITS KAMTVVNMFM GDMFERIAQE AARLSDYTKR
201: RTLSSREIEA AVRLVLPGEL SRHAVAEGSK AVSNFVGYDS RKR
101: EVRDEPSPQP PETPASKSEG TLKKTDKVEK KQENKKKKKK KKRDDLAGDE YRRYVYKVMK QVHPDLGITS KAMTVVNMFM GDMFERIAQE AARLSDYTKR
201: RTLSSREIEA AVRLVLPGEL SRHAVAEGSK AVSNFVGYDS RKR
Arabidopsis Description
Histone H2B.2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SGE3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.