Factsheet for Zm00001d005322_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G311600.1	Wheat	mitochondrion	25.95	76.4
EER98531	Sorghum	nucleus	78.24	68.56
Os09t0570850-00	Rice	nucleus	34.73	59.87
HORVU4Hr1G000750.1	Barley	nucleus	33.97	50.0
Zm00001d012423_P001	Maize	plastid	22.52	43.07
Zm00001d044247_P001	Maize	plastid	24.05	42.57
Zm00001d042930_P001	Maize	plastid	22.14	42.34
Zm00001d011236_P001	Maize	plastid	24.05	42.0
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	33.59	41.9
Zm00001d050100_P001	Maize	plastid	23.66	41.33
Zm00001d025913_P001	Maize	plastid	23.66	41.33
Zm00001d039821_P001	Maize	plastid	23.28	40.94
Zm00001d051591_P001	Maize	plastid	24.05	40.91
Zm00001d005789_P001	Maize	plastid	23.66	40.79
Zm00001d007084_P001	Maize	plastid	23.66	40.79
TraesCS4B01G002800.1	Wheat	nucleus	47.71	40.72
Zm00001d032070_P001	Maize	plastid	23.28	40.67
Zm00001d020580_P001	Maize	plastid	23.28	40.4
VIT_06s0061g00870.t01	Wine grape	nucleus	30.15	36.57
KRH30545	Soybean	mitochondrion, nucleus	27.1	35.68
KRH25129	Soybean	nucleus	30.15	35.11
AT1G08170.1	Thale cress	nucleus	27.86	30.04
PGSC0003DMT400018366	Potato	mitochondrion, nucleus	30.53	29.3
Solyc06g074750.1.1	Tomato	mitochondrion, nucleus	30.15	27.92
CDX93584	Canola	nucleus	26.72	27.24
Bra018647.1-P	Field mustard	nucleus	26.72	27.24
Zm00001d048491_P001	Maize	plastid	23.28	25.63
CDX95087	Canola	nucleus	27.1	22.26

Protein Annotations

Gene3D:1.10.20.10	EntrezGene:103647254	MapMan:12.1.3	UniProt:A0A1D6ELS0	GO:GO:0000786	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005694	GO:GO:0046982	InterPro:Histone-fold	InterPro:Histone_H2A/H2B/H3
InterPro:Histone_H2B	InterPro:IPR009072	ProteinID:ONM20829.1	PFAM:PF00125	PRINTS:PR00621	PANTHER:PTHR23428
PANTHER:PTHR23428:SF50	SMART:SM00427	SUPFAM:SSF47113	UniParc:UPI000221EAED	EnsemblPlantsGene:Zm00001d005322	EnsemblPlants:Zm00001d005322_P001
EnsemblPlants:Zm00001d005322_T001	SEG:seg	:	:	:	:

Description

Histone H2B

Coordinates

chr2:+:169589993..169590781

Molecular Weight (calculated)

28163.5 Da

IEP (calculated)

9.808

GRAVY (calculated)

-0.683

Length

262 amino acids

Sequence
(BLAST)

001: MAPKRRGNKV VGSVVKTKLV QETVEVIVAD DDGLHAEKQQ VPEALALAHP TVDVSGSTVV HVVEVTAKRG RGGGGGGGGG GRRNEGKPPP EEDSAAVPVP
101: QSQETQDPNE ELEFELEDEE EKQPETPRVA SEKRKKAATP TKKTKTQQPR RRRQRLGQAS SGGDAGMGGV GGYRRYVWRV LKQVHPDLGV SGHAMQVLDM
201: MMADMFERLA EEAARLSKAT GRATLTSREV QSAVRLVLPG ELGRHAISEG TKAISKYMSY AA

Best Arabidopsis Sequence Match ( AT1G08170.1 )
(BLAST)

001: MAPRKPKVVS VTKKKKVVEE TIKVTVTEEG DPCVITETAN DQETQDLTFS IPVGENVTTV EIPVEVPDER SLPVGENVTT VKIPVDDRDE SSPQPPETPV
101: EVRDEPSPQP PETPASKSEG TLKKTDKVEK KQENKKKKKK KKRDDLAGDE YRRYVYKVMK QVHPDLGITS KAMTVVNMFM GDMFERIAQE AARLSDYTKR
201: RTLSSREIEA AVRLVLPGEL SRHAVAEGSK AVSNFVGYDS RKR

Arabidopsis Description

Histone H2B.2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SGE3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.